View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_71 (Length: 344)
Name: NF0908_low_71
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_71 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 4676795 - 4677108
Alignment:
| Q |
13 |
aaaataatagtgttcatgtgagggtacctcagttagtacccgtctatttactagtatctatagcaaggatataagactttaattaaaaaactagttaagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676795 |
aaaataatagtgttcatgtgagggtaactcagttagtacccgtctatccactagtatctatagcaaggatataagactttaattaaaaaactagttaagt |
4676894 |
T |
|
| Q |
113 |
ttcatgataataagaacaatatcttaatagaaaaagaggaacggcaagggagcttgcaacaaactatttatctttttcgattctcatattctcttttctt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4676895 |
ttcatgataataagaacaatatcttaataaaaaaagaggaacggcaagggagcttgcaacaaactatttatctttttcgattctcatgttctcttttctt |
4676994 |
T |
|
| Q |
213 |
tgcactttcctttacccttcccttgttttcattatttcttgttgtgacctat---ttatatatttccatcgctacagcctacatgtaccatttcaccgct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676995 |
tgcactttcctttacccttcccttgttttcattatttcttggtgtgacctatttattatatatttccatcgctacagcctacatgtaccatttcaccgct |
4677094 |
T |
|
| Q |
310 |
cgagtattgttttt |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4677095 |
cgagtattgttttt |
4677108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 711 times since January 2019
Visitors: 6696