View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_73 (Length: 344)
Name: NF0908_low_73
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_73 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 76 - 344
Target Start/End: Complemental strand, 28506648 - 28506380
Alignment:
| Q |
76 |
gagtgagatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
175 |
Q |
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| T |
28506648 |
gagtgacatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
28506549 |
T |
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| Q |
176 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
275 |
Q |
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| T |
28506548 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
28506449 |
T |
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| Q |
276 |
ggaactagcatgaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggttt |
344 |
Q |
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| T |
28506448 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggttt |
28506380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 326
Target Start/End: Original strand, 51874289 - 51874434
Alignment:
| Q |
181 |
ataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagatggaac |
280 |
Q |
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||||| |||||||||||||||||| | |||||||||||| | |||||||||||||||||||| || ||| |||||||||| ||||| || |||| |||| |
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| T |
51874289 |
ataggtaaaatatcaggtccaacagctataactggtttactcttatattcaagagctatgatctctatgcttttccttggctatctcggcgagacagaac |
51874388 |
T |
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| Q |
281 |
tagcatgaggttcactttcaataggctttgcaaatatcactggtta |
326 |
Q |
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| T |
51874389 |
tagcaggaggttctctctccataggttttgcaaacataactggtta |
51874434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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