View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_76 (Length: 334)

Name: NF0908_low_76
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_76
NF0908_low_76
[»] chr2 (4 HSPs)
chr2 (122-324)||(15089176-15089381)
chr2 (185-324)||(14815526-14815665)
chr2 (122-324)||(14461868-14462075)
chr2 (85-124)||(15089086-15089125)
[»] chr7 (2 HSPs)
chr7 (122-315)||(6651153-6651349)
chr7 (155-324)||(36714152-36714326)
[»] chr5 (4 HSPs)
chr5 (153-324)||(14050444-14050619)
chr5 (129-267)||(34152413-34152554)
chr5 (253-315)||(15567477-15567539)
chr5 (214-267)||(34579603-34579656)
[»] chr8 (2 HSPs)
chr8 (213-324)||(33468626-33468737)
chr8 (213-269)||(4780857-4780913)
[»] scaffold0001 (1 HSPs)
scaffold0001 (230-315)||(68034-68119)
[»] chr3 (1 HSPs)
chr3 (129-242)||(29541130-29541243)
[»] chr4 (1 HSPs)
chr4 (165-241)||(41972903-41972982)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 122 - 324
Target Start/End: Original strand, 15089176 - 15089381
Alignment:
Q  122 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgt---tttgcaggtttgtgttaccgataagtggat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||| |    
T  15089176 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggagcagttgtcacttgttgttttgcaggtttgtgttaccgataagtggtt 15089275  T
Q  219 ttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatg 318  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||    
T  15089276 ttggaagctttattcttcccatcgatacacggttaaaagtgcttataatctttcgataacttctgaagttggtgttgatgaacgttttaatcatgttttg 15089375  T
Q  319 cggctt 324  Q
     |||||    
T  15089376 tggctt 15089381  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 324
Target Start/End: Original strand, 14815526 - 14815665
Alignment:
Q  185 ttgttttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctga 284  Q
    |||||||||||||| |||| || |||| ||||||||||||||||  |||||||||| ||||||| || ||||||||||||||| ||| ||||||||||||    
T  14815526 ttgttttgcaggttggtgtgactgatatgtggatttggaagcttctttcttcccataaatacacagtcaaaagtgcttataattatttgataacttctga 14815625  T
Q  285 agttggtgttgatgaccgttttaatcatgttatgcggctt 324  Q
    ||||||||| ||||| ||||||||||||||| || |||||    
T  14815626 agttggtgtagatgatcgttttaatcatgttttgtggctt 14815665  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 324
Target Start/End: Original strand, 14461868 - 14462075
Alignment:
Q  122 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcactt---gttttgcaggtttg-tgttaccgataagtgga 217  Q
    |||||| ||| |||||||| || ||||| ||||||||||||||||||  ||| ||  ||||||||   |||||| ||||| | ||| || || | |||||    
T  14461868 ggcgtaggagtttgtttgcgtgggaggaagggttggtgagggagtgtgcggagcaactgtcacttattgttttgtaggttggatgtgactgaaatgtgga 14461967  T
Q  218 tttggaagctttattcttcccatcaatacacggttaaaagtgc-ttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgtta 316  Q
    ||| ||||||| |||||| |||||||||||  || |||||||| |||||||| || || ||||| ||| |||||| |||||||  ||||||||||||||     
T  14461968 tttagaagcttcattctttccatcaatacatagtcaaaagtgctttataatcttttgacaacttttgaggttggtattgatgagtgttttaatcatgttt 14462067  T
Q  317 tgcggctt 324  Q
    || |||||    
T  14462068 tgtggctt 14462075  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15089086 - 15089125
Alignment:
Q  85 ggatgtcgaataatattattagatgggtgggggatggggc 124  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  15089086 ggatgtcggataatgttattagatgggtgggggatggggc 15089125  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 315
Target Start/End: Complemental strand, 6651349 - 6651153
Alignment:
Q  122 ggcgtatgagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggat 218  Q
    |||||| ||||| |||||||||  ||||  ||||| |||||||||||| ||| ||  |||||||||||   ||| || || |||| || || |  |||||    
T  6651349 ggcgtaggagatcgtttgcatggaaggaatggttgatgagggagtgtacggagcaactgtcacttgttgttttgtagattggtgtgactgacagatggat 6651250  T
Q  219 ttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgtt 315  Q
    ||  |||||| ||||||||||||  || || || ||||||||||||||||||| || || |||||||||| | |||||||||| |||||||||||||    
T  6651249 ttaaaagcttcattcttcccatcggtatacagtcaaaagtgcttataatcatttgacaaattctgaagtttgagttgatgaccattttaatcatgtt 6651153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 324
Target Start/End: Complemental strand, 36714326 - 36714152
Alignment:
Q  155 tggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccat--caatacacg 249  Q
    |||||||||||| |  ||||||| |||||||||||   ||| ||||| ||||  | ||||  || ||||||||| || |||||||||||  | ||| ||     
T  36714326 tggtgagggagtctgcggaacagctgtcacttgttgttttgtaggttggtgtggctgatagatgaatttggaagtttcattcttcccatatcgataaaca 36714227  T
Q  250 gttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgcggctt 324  Q
    || |||| ||||| ||||| || || ||||| | || ||||||||||||||||||||||||||||| || |||||    
T  36714226 gtcaaaaatgcttgtaatcttttgacaacttttaaaattggtgttgatgaccgttttaatcatgttttgtggctt 36714152  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 324
Target Start/End: Original strand, 14050444 - 14050619
Alignment:
Q  153 gttggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccatcaatacacg 249  Q
    |||||||| ||||||| |||| ||| |||||||||||   ||  ||||| |||| || || | ||| |||||||||||| |||||||||||| |||| |     
T  14050444 gttggtgaaggagtgtgtggagcagctgtcacttgttattttataggttggtgtgactgacaggtgaatttggaagcttcattcttcccatcgatactca 14050543  T
Q  250 gtta-aaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgttatgcggctt 324  Q
    || | ||| ||||||||||| || || ||||| |||| |||||||||||||| |||||| |||||||||| |||||    
T  14050544 gtaataaaatgcttataatcttttgaaaacttgtgaaattggtgttgatgactgttttagtcatgttatgtggctt 14050619  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 34152554 - 34152413
Alignment:
Q  129 gagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgtt---ttgcaggtttgtgttaccgataagtggatttggaag 225  Q
    |||||||||||| || ||||| | |||||| || ||||||  ||| ||| | |||||||||   ||||||||| |||| |  || | |||||||||||||    
T  34152554 gagattgtttgcgtgggaggaggagttggtaagcgagtgtgcggagcagctttcacttgttgtattgcaggttggtgtgaatgacaggtggatttggaag 34152455  T
Q  226 ctttattcttcccatcaatacacggttaaaagtgcttataat 267  Q
    ||| |||||||| ||   |||||||||||||| |||||||||    
T  34152454 cttcattcttcctataggtacacggttaaaagcgcttataat 34152413  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 15567477 - 15567539
Alignment:
Q  253 aaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgtt 315  Q
    |||| ||||||||||| || || ||||||||  |||||| || ||||||||||||||||||||    
T  15567477 aaaaatgcttataatcttttgacaacttctgcggttggtattaatgaccgttttaatcatgtt 15567539  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 34579603 - 34579656
Alignment:
Q  214 tggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataat 267  Q
    |||||||||||||||||| |||| || || || ||||| |||||||||||||||    
T  34579603 tggatttggaagctttatccttctcaacagtatacggtgaaaagtgcttataat 34579656  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 33468737 - 33468626
Alignment:
Q  213 gtggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcat 312  Q
    |||||||||||||||| |||||||||||| |||||  || |||  ||||||| ||| || || ||||||| || ||| ||||||||||||||||||||||    
T  33468737 gtggatttggaagcttcattcttcccatccatacatagtaaaatatgcttattatcttttgacaacttctaaaattgatgttgatgaccgttttaatcat 33468638  T
Q  313 gttatgcggctt 324  Q
    ||| || |||||    
T  33468637 gttttgtggctt 33468626  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 4780913 - 4780857
Alignment:
Q  213 gtggatttggaagctttattcttcccatcaatacacggttaaaagtgcttataatca 269  Q
    |||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||    
T  4780913 gtggatttggaagcttcattcttcccataagtacacggtcaaaagtgcttataatca 4780857  T

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Target: scaffold0001 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 68119 - 68034
Alignment:
Q  230 attcttcccatcaatacacggttaaaagtgcttataatcattggataacttctgaagttggtgttgatgaccgttttaatcatgtt 315  Q
    |||||||||||| |||||| || |||||||||||||||| ||  |||| ||||||||||  | |||||||||||||||||||||||    
T  68119 attcttcccatcgatacacagtcaaaagtgcttataatcttttaataatttctgaagttaatattgatgaccgttttaatcatgtt 68034  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 29541243 - 29541130
Alignment:
Q  129 gagattgtttgcatgagaggatgggttggtgagggagtgtatggaacagttgtcacttgttttgcaggtttgtgttaccgataagtggatttggaagctt 228  Q
    ||||||||| || || ||||| |||||||||||||||||| |||| ||| | ||||||||||||||||||  ||| ||||  | ||| ||||||||| ||    
T  29541243 gagattgttcgcgtgggaggaggggttggtgagggagtgtgtggagcagctatcacttgttttgcaggttgttgtgaccggcatgtgtatttggaagatt 29541144  T
Q  229 tattcttcccatca 242  Q
     |||||||||||||    
T  29541143 cattcttcccatca 29541130  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 41972903 - 41972982
Alignment:
Q  165 gtgtatggaacagttgtcacttgt---tttgcaggtttgtgttaccgataagtggatttggaagctttattcttcccatc 241  Q
    |||| |||| ||||||||||||||   |||||||||| |||| || || | |||||||||||||||| ||||||||||||    
T  41972903 gtgtgtggagcagttgtcacttgttgttttgcaggttcgtgtgactgacatgtggatttggaagcttcattcttcccatc 41972982  T

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