View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_82 (Length: 322)
Name: NF0908_low_82
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 85 - 320
Target Start/End: Original strand, 49494329 - 49494564
Alignment:
| Q |
85 |
gaacaatggggtttatggaattaatttgaaggttttgcttaatgttaggtttgccttgggtttgatcaagacagggaatctgaaacaaaaccatcattgt |
184 |
Q |
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| T |
49494329 |
gaacaatggggtttatggaattaatttgaaggttttgcttaatgttaggtttgccttgggtttgatcaagacagggaatctgaaacaaaaccatcattgt |
49494428 |
T |
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| Q |
185 |
gatttgaaggttcctttcaagtcacacaatggaacttcttctttgggtaatggatttcaagccactcgttgtgaatgggattccaaatggaggttgttgt |
284 |
Q |
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| T |
49494429 |
gatttgaaggttcctttcaagtcacacaatggaacttcttctttgggtaatggatttcaagccactcgttgtgaatgggattccaaatggtggttgttgt |
49494528 |
T |
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| Q |
285 |
tccgttagagcttattatataagccactcaacttat |
320 |
Q |
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| T |
49494529 |
tccgttagagcttattatataagccactcaacttat |
49494564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 22602047 - 22601971
Alignment:
| Q |
181 |
ttgtgatttgaaggttcctttcaagtcacacaatggaacttcttctttgggtaatggatttcaagccactcgttgtg |
257 |
Q |
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| T |
22602047 |
ttgtgatttgaaggtgcctttgaaatcacataatggttcttcttctttggggaatggttttcaagctactcattgtg |
22601971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 25169856 - 25169756
Alignment:
| Q |
181 |
ttgtgatttgaaggttcctttcaagtcacacaatggaacttcttctttgggtaatggatttcaagccactcgttgtgaatgggattccaaatggaggttg |
280 |
Q |
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||||||||||||||| ||||| || ||||| ||||| ||||||||||||| |||| |||||||| ||| ||||| ||||||| ||||||||| ||| |
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| T |
25169856 |
ttgtgatttgaaggtacctttgaaatcacataatggttcttcttctttggggaatgtgtttcaagctactgaatgtgattgggattacaaatggagattg |
25169757 |
T |
|
| Q |
281 |
t |
281 |
Q |
| |
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| |
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| T |
25169756 |
t |
25169756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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