View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_85 (Length: 319)
Name: NF0908_low_85
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_85 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 80 - 319
Target Start/End: Original strand, 23696566 - 23696806
Alignment:
| Q |
80 |
gaatatgcagatgaaatacaattacctgtggtgcatgcaaatgttgatactgaaactaacctcaaacctgttgaaggtgaatcttcttctcaattgaaaa |
179 |
Q |
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| T |
23696566 |
gaatatgcagatgaaatacaattacctgcggtgcatgcaaatgttgatactgaaactaacctcaaacctgttgaatgtgaatcttcttctcaattgaaaa |
23696665 |
T |
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| Q |
180 |
-aatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtgaatattgtgttggaagtt |
278 |
Q |
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| T |
23696666 |
aaatcctactgtgctatctgcatggaagctaaacctgctgcagaaatgttcgaaaaccaaaactgttcacactctttctgtgaaggatgtgttggaagtt |
23696765 |
T |
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| Q |
279 |
atctagctgcaaaaattcaagagaatatagcaatggtaaaa |
319 |
Q |
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| T |
23696766 |
atctagctgcaaaaattcaagagaatatagcaatggtaaaa |
23696806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 319
Target Start/End: Complemental strand, 23701286 - 23701126
Alignment:
| Q |
161 |
tcttcttctcaattgaaaaaatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtg |
260 |
Q |
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| T |
23701286 |
tcttcttctcagttgaaacaatcctattgtgatatctgtatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgtg |
23701187 |
T |
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| Q |
261 |
aatattgtgttggaagttatctagctgcaaaaatt--caagagaatatagcaatggtaaaa |
319 |
Q |
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| T |
23701186 |
aatattgtgttggaagatatctagctgcaaaaattcacaagagagtatatcaatggtaaaa |
23701126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 161 - 319
Target Start/End: Original strand, 23694517 - 23694675
Alignment:
| Q |
161 |
tcttcttctcaattgaaaaaatcctactgtgctatctgcatggaagctaaacctgttgaagatatgtttaaaaaccaaaactgttcacactctttctgtg |
260 |
Q |
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| T |
23694517 |
tcttcttctcagttgaaacaatcctactgtgctatttgtatggaagctaaacccgttgaagaaatgttccagaaccaaaaatgttcacattctttctgtg |
23694616 |
T |
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| Q |
261 |
aatattgtgttggaagttatctagctgcaaaaattcaagagaatatagcaatggtaaaa |
319 |
Q |
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| T |
23694617 |
aagattgtcttggaagatatctagctgcaaaaattcaagagagtatatcaatggtaaaa |
23694675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 8149347 - 8149282
Alignment:
| Q |
238 |
aaactgttcacactctttctgtgaatattgtgttggaagttatctagctgcaaaaattcaagagaa |
303 |
Q |
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| T |
8149347 |
aaactgttcgcactctttctgtgaagattgtgttgcaagatttctagctgtgaaaattcaagagaa |
8149282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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