View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_89 (Length: 318)
Name: NF0908_low_89
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_89 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 11285951 - 11286255
Alignment:
| Q |
14 |
agacaagttattaaaaagtaatcacagtttcattgttcaacagcaacaaggaaacaaatcaacaacaaaatactaccttagtgggctccagactcacaag |
113 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11285951 |
agacaagttattaaaaaggaatcacaatttcattgttcgacagcaacgaggaaacaaatcaacaacaaaatactaccttagtgggctctagactcacaag |
11286050 |
T |
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| Q |
114 |
gccgcaggctcgcgccgctatcccactagagttgcgggaaacagcaacgataccaatagattccggaccaggctacacaaagacattaaaattgaatgtt |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11286051 |
gccacaggctcgcgccgctatcccactagagttgcgggaaacagcaacgataccaatagattccggaccaggctacacaaagacattaaaattgactgtt |
11286150 |
T |
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| Q |
214 |
aacacactaacatcaacaaacaattataaaattgttcaataggtcatcgttgtcattatatgataccttcatcccaatcatctgcacccagtcgacagca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11286151 |
aacacactaacatcaacaaacaattataaaattgttcaataggtcatcgttatcattatatgataccttcatcccaatcatctgcacccagtcgacagca |
11286250 |
T |
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| Q |
314 |
gttcc |
318 |
Q |
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||||| |
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| T |
11286251 |
gttcc |
11286255 |
T |
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