View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0909_high_1 (Length: 424)
Name: NF0909_high_1
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 30 - 412
Target Start/End: Complemental strand, 33223832 - 33223451
Alignment:
| Q |
30 |
catttgtgcatcatataattgatctcgagacttccaatgagtcttgtatgaatccattattctagaaatcactcacattcaactgttttgtgttgcaacc |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223832 |
catttgtgcatcatataattgatcttgagtcttccaatgagtcttgtat-aatccattattctagaaatcactcacattcaactgttttgtgttgcaact |
33223734 |
T |
|
| Q |
130 |
aaacgattaacactagtaaatattgatgatagcaaatcacttgtgacaaaacaatttatctttaaatgttcacccatgtttatttgagtgtgcagaaaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33223733 |
aaacgattaacactagtaaatattgatgatagcaaatcacttgtgacaaaacaatttatctttaaatgttaacccatgtttatttgagtgtgcagaaaga |
33223634 |
T |
|
| Q |
230 |
ataagtataaagatcgtctattatgaattccataagatgaaagaattcaatggatatcacatgcagataaagaaatttatttccaatagaaaagaatcca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223633 |
ataagtataaagatcgtctattatgaattccataagatgaaagaattcaatggatatcacatgcagataaagaaatttatttccaatagaaaagaatcca |
33223534 |
T |
|
| Q |
330 |
aacaactttacttttaagaattgaatggttatcatatagagatttctgtatgattgatcgtatatataagataataggagaat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33223533 |
aacaactttacttttaagaattgaatggttatcatatagagatttctgtatgattgatcgtatatataagataatagaagaat |
33223451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 646 times since January 2019
Visitors: 6696