View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0909_low_1 (Length: 521)
Name: NF0909_low_1
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 81 - 503
Target Start/End: Original strand, 37707120 - 37707542
Alignment:
| Q |
81 |
aataagatagttacaagatcttgcggatgtcagaggaagaagatttgagatatgaagctgaattcaaagctcataaccttcgggaatagccagaacctgc |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707120 |
aataagatagttacaagatcttgcggatgtcagaggaagaagatttgagatataaagctgaattcaaagctcataaccttcgggaatagccagaacctgc |
37707219 |
T |
|
| Q |
181 |
acatttcttgcagagtaccaatcctacaaaatgtgaattagacacgggtattagtagattatactgtgaaatatcttgttggttttcaccagaatcgcgg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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|
| T |
37707220 |
acatttcttgcagagtaccaatcctacaaaatgtgaattagacacgggtattagtagattataccgtgaaatatcttgtgggttttcaccagaatcgcag |
37707319 |
T |
|
| Q |
281 |
atcatggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaaaactatatcaaataacgtatcgca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707320 |
atcatggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaaaactatatcaaataacgtatcgca |
37707419 |
T |
|
| Q |
381 |
aaacaataacgatttattcaaattccagtatggcgtacactatagctactattttacaacactggtttcctaccaaaagtaaaaacattctactaaagac |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707420 |
aaacaataacgatttattcaaattccagtatggcgtacactagagccgctattttacaacactggtttcctaccaaaagtaaaaacattctactaaagac |
37707519 |
T |
|
| Q |
481 |
agtacagagaagcacaacccaaa |
503 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
37707520 |
agtacagagaagcacaacccaaa |
37707542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 74 - 503
Target Start/End: Original strand, 37442892 - 37443322
Alignment:
| Q |
74 |
tatgaacaataagatagttacaagatcttgcggatgtcagaggaagaagatttgagatatgaagctgaattcaaagctcataaccttcgggaatagccag |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37442892 |
tatgaacaataagatagttacaagatcttgcagatgtcaggggaagaagatttaagctataaggctgaattcaaagctcataaccttcgggaatagccag |
37442991 |
T |
|
| Q |
174 |
aacctgcacatttcttgcagagtaccaatcctacaaaatgtgaattagacacgggtattagtagattatactgtgaaa-tatcttgttggttttcaccag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
37442992 |
aacctgcacatttcttgcagagtaccaatcctacaaaatgtgaattagacacgggtattagtagattataccatgaaaatatcttgttggttttcaccag |
37443091 |
T |
|
| Q |
273 |
aatcgcggatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaaaactatatcaaataac |
372 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37443092 |
aatcgcagatcacagaaaataacactttgttcaaattttgctaagctacaatgctacagtgacactagagccactatttaacaaaactatatcgaataac |
37443191 |
T |
|
| Q |
373 |
gtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctactattttacaacactggtttcctaccaaaagtaaaaacattcta |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37443192 |
gtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctgctattttacaacactggtttcctaccaaaagtaaaaacattcta |
37443291 |
T |
|
| Q |
473 |
ctaaagacagtacagagaagcacaacccaaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37443292 |
ctaaagacagtacagagaagcacaacccaaa |
37443322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 39647259 - 39647292
Alignment:
| Q |
374 |
tatcgcaaaacaataacgatttattcaaattcca |
407 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
39647259 |
tatcgcagaacaataacgatttattcaaattcca |
39647292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 34925266 - 34925316
Alignment:
| Q |
280 |
gatcatggaaaataacactttgttcaaattctgctaagctacaatgctata |
330 |
Q |
| |
|
|||| ||||||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
34925266 |
gatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctata |
34925316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 11501488 - 11501559
Alignment:
| Q |
286 |
ggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaaa |
357 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||| | |||||||||| |||| ||||||||||| ||||| |
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|
| T |
11501488 |
ggaaaataacagtttgttcaaattccactatgctagagtgctataatgctactatagccactatttgacaaa |
11501559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 40908834 - 40908800
Alignment:
| Q |
275 |
tcgcggatcatggaaaataacactttgttcaaatt |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
40908834 |
tcgcggatcatggaaaataacagtttgttcaaatt |
40908800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 4541645 - 4541583
Alignment:
| Q |
339 |
agagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaa |
401 |
Q |
| |
|
||||||||||||| |||| ||| || |||||| | ||| |||||||||||||||||| ||||| |
|
|
| T |
4541645 |
agagccactatttgacaacactgtaccaaatagcatattgcaaaacaataacgatttgttcaa |
4541583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 21901372 - 21901327
Alignment:
| Q |
286 |
ggaaaataacactttgttcaaattctgctaagctacaatgctataa |
331 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
21901372 |
ggaaaatagcactttgtttaaattctgctacgctacaatgttataa |
21901327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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