View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0909_low_12 (Length: 321)

Name: NF0909_low_12
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0909_low_12
NF0909_low_12
[»] chr3 (22 HSPs)
chr3 (93-317)||(17010097-17010321)
chr3 (93-317)||(17020903-17021127)
chr3 (110-195)||(1790529-1790614)
chr3 (110-190)||(4408394-4408474)
chr3 (95-211)||(15222722-15222838)
chr3 (95-192)||(9002427-9002524)
chr3 (140-212)||(6497046-6497118)
chr3 (140-212)||(9988589-9988661)
chr3 (110-193)||(9387240-9387323)
chr3 (98-193)||(29902166-29902261)
chr3 (98-193)||(29943332-29943427)
chr3 (98-193)||(29992486-29992581)
chr3 (140-193)||(16387587-16387640)
chr3 (125-213)||(7800734-7800822)
chr3 (125-213)||(17906217-17906305)
chr3 (98-204)||(17963781-17963884)
chr3 (140-227)||(12954623-12954710)
chr3 (110-213)||(13075065-13075168)
chr3 (98-192)||(16667096-16667190)
chr3 (143-315)||(18137684-18137855)
chr3 (144-192)||(37870550-37870598)
chr3 (144-192)||(37879068-37879116)
[»] chr1 (4 HSPs)
chr1 (93-315)||(19166345-19166567)
chr1 (93-315)||(21131015-21131237)
chr1 (95-317)||(21212377-21212597)
chr1 (144-192)||(19182948-19182996)
[»] chr6 (13 HSPs)
chr6 (95-315)||(11239514-11239734)
chr6 (152-315)||(22379950-22380113)
chr6 (95-192)||(22290028-22290125)
chr6 (110-212)||(18922099-18922201)
chr6 (93-207)||(21123515-21123629)
chr6 (95-207)||(18830964-18831076)
chr6 (140-212)||(26037631-26037703)
chr6 (125-192)||(25731536-25731603)
chr6 (140-192)||(4634961-4635013)
chr6 (125-213)||(12369727-12369815)
chr6 (125-213)||(20036586-20036674)
chr6 (131-211)||(25797882-25797962)
chr6 (140-192)||(32307760-32307812)
[»] scaffold0056 (1 HSPs)
scaffold0056 (93-315)||(30881-31103)
[»] scaffold0015 (1 HSPs)
scaffold0015 (93-315)||(162278-162500)
[»] chr8 (9 HSPs)
chr8 (173-312)||(21292271-21292410)
chr8 (120-192)||(18157601-18157673)
chr8 (125-286)||(19933119-19933280)
chr8 (95-192)||(23370030-23370127)
chr8 (140-212)||(32084436-32084508)
chr8 (115-212)||(23466012-23466106)
chr8 (110-193)||(25680679-25680762)
chr8 (95-177)||(3836959-3837041)
chr8 (125-205)||(19422411-19422491)
[»] chr7 (8 HSPs)
chr7 (227-317)||(4421720-4421810)
chr7 (125-192)||(25207802-25207869)
chr7 (95-192)||(18432604-18432701)
chr7 (125-213)||(9163621-9163709)
chr7 (140-212)||(1991598-1991670)
chr7 (234-297)||(16553395-16553458)
chr7 (234-297)||(16612204-16612267)
chr7 (144-192)||(9437334-9437382)
[»] scaffold0249 (1 HSPs)
scaffold0249 (93-312)||(11596-11815)
[»] scaffold1078 (1 HSPs)
scaffold1078 (93-189)||(445-541)
[»] scaffold0719 (1 HSPs)
scaffold0719 (95-192)||(3325-3422)
[»] scaffold0011 (1 HSPs)
scaffold0011 (125-312)||(131324-131511)
[»] chr5 (14 HSPs)
chr5 (110-193)||(17450731-17450814)
chr5 (125-212)||(20786840-20786927)
chr5 (95-192)||(21418364-21418461)
chr5 (125-210)||(23402705-23402790)
chr5 (140-212)||(15746795-15746867)
chr5 (140-212)||(17613889-17613961)
chr5 (140-212)||(17725746-17725818)
chr5 (125-213)||(20558543-20558631)
chr5 (140-212)||(31355363-31355435)
chr5 (140-212)||(37733929-37734001)
chr5 (143-193)||(34058747-34058797)
chr5 (125-213)||(24932203-24932291)
chr5 (144-192)||(34778707-34778755)
chr5 (140-192)||(36694525-36694577)
[»] chr4 (8 HSPs)
chr4 (110-189)||(19575131-19575210)
chr4 (125-195)||(3377040-3377110)
chr4 (95-192)||(10294782-10294879)
chr4 (95-192)||(11519220-11519317)
chr4 (140-212)||(18759199-18759271)
chr4 (140-212)||(24644401-24644473)
chr4 (140-212)||(27191970-27192042)
chr4 (140-212)||(55751958-55752030)
[»] scaffold1362 (1 HSPs)
scaffold1362 (110-192)||(163-245)
[»] scaffold0497 (1 HSPs)
scaffold0497 (95-192)||(6321-6418)
[»] scaffold0410 (1 HSPs)
scaffold0410 (95-192)||(10639-10736)
[»] scaffold0195 (1 HSPs)
scaffold0195 (95-192)||(30122-30219)
[»] scaffold0017 (1 HSPs)
scaffold0017 (95-192)||(179570-179667)
[»] chr2 (7 HSPs)
chr2 (95-192)||(22748192-22748289)
chr2 (95-192)||(22767814-22767911)
chr2 (125-193)||(26871205-26871273)
chr2 (141-210)||(18941905-18941974)
chr2 (140-212)||(35257013-35257085)
chr2 (140-212)||(35267637-35267709)
chr2 (144-192)||(29248264-29248312)
[»] scaffold0272 (2 HSPs)
scaffold0272 (125-193)||(18274-18342)
scaffold0272 (125-193)||(23361-23429)
[»] scaffold1002 (1 HSPs)
scaffold1002 (125-212)||(356-443)
[»] scaffold0012 (1 HSPs)
scaffold0012 (98-189)||(131759-131850)
[»] scaffold0014 (1 HSPs)
scaffold0014 (95-192)||(220385-220482)
[»] scaffold0022 (1 HSPs)
scaffold0022 (144-192)||(49681-49729)
[»] scaffold0398 (2 HSPs)
scaffold0398 (125-192)||(408-475)
scaffold0398 (125-192)||(8663-8730)
[»] scaffold0594 (1 HSPs)
scaffold0594 (140-210)||(3769-3839)
[»] scaffold0176 (1 HSPs)
scaffold0176 (143-297)||(13100-13254)
[»] scaffold0411 (1 HSPs)
scaffold0411 (95-192)||(3077-3174)
[»] scaffold0322 (1 HSPs)
scaffold0322 (140-192)||(5500-5552)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 93 - 317
Target Start/End: Complemental strand, 17010321 - 17010097
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17010321 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacaagaagctcctgcctatgagataaaaggaaggactatgtcgttggaagaatggga 17010222  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  17010221 tctcaagattaaaacagaaaacccaatagacttcaagtcactagccttccatggctgtgacatcagcaagtactacgaagcacaaggcttagtagaatac 17010122  T
Q  293 ttcaatttcttaaatggaccaacct 317  Q
    ||||| |||||||||||||||||||    
T  17010121 ttcaaattcttaaatggaccaacct 17010097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 93 - 317
Target Start/End: Complemental strand, 17021127 - 17020903
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17021127 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacaagaagctcctgcctatgagataaaaggaaggactatgtcgttggaagaatggga 17021028  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  17021027 tctcaagattaaaacagaaaacccaatagacttcaagtcactagccttccatggctgtgacatcagcaagtactacgaagcacaaggcttagtagaatac 17020928  T
Q  293 ttcaatttcttaaatggaccaacct 317  Q
    ||||| |||||||||||||||||||    
T  17020927 ttcaaattcttaaatggaccaacct 17020903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 1790529 - 1790614
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaact 195  Q
    |||| |||| |||| |||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||    
T  1790529 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctacgagattaaaggaagaaccatgtccttggaggaatgggaact 1790614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 4408474 - 4408394
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgg 190  Q
    |||| |||| |||| |||||||||||||| || ||||||||||||||||| |||||||| || ||||| ||||| ||||||    
T  4408474 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctatgagatcaaaggaagaaccatgtccttggaggaatgg 4408394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 15222722 - 15222838
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaac 194  Q
    |||||||| |||| ||||| |||| | || |||| ||||||||| ||| |||||||||| |||||||||||||| || ||||| ||||| |||| |||      
T  15222722 tcatcaagttctgctcctggatcatcatctaacaagcaacaacaagaaactcctgcctacgagataaaaggaagaaccatgtccttggaggaataggatt 15222821  T
Q  195 tcaagattcaaacagaa 211  Q
    | || ||||||||||||    
T  15222822 tgaaaattcaaacagaa 15222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 9002427 - 9002524
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||| || |||| ||||| |||| | || |||| ||||||||| |||||||||||||| ||||| |||||||| || ||||| ||||| ||||||||    
T  9002427 tcatctagttctgctcctggatcatcatctaacaagcaacaacaagaagctcctgcctacgagattaaaggaagaaccatgtccttggaggaatggga 9002524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 6497046 - 6497118
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  6497046 gaagctcctgcctatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 6497118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 9988589 - 9988661
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  9988589 gaagctcctgcctatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 9988661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 9387240 - 9387323
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    |||| |||| |||| |||||||||||||| || ||||||||||| || || |||||||| || ||||| ||||| |||||||||    
T  9387240 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctacgaaatcaaaggaagaaccatgtccttggaggaatgggaa 9387323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 29902166 - 29902261
Alignment:
Q  98 tcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    ||||| |||| ||||| |||| | || |||| ||||||||| ||| ||||||| ||||||||||||||||| ||  |||| ||||| |||||||||    
T  29902166 tcaagttctgctcctggatcatcatctaacaagcaacaacaggaaactcctgcttatgagataaaaggaagaaccgtgtccttggaggaatgggaa 29902261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 29943332 - 29943427
Alignment:
Q  98 tcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    ||||| |||| ||||| |||| | || |||| ||||||||| ||| ||||||| ||||||||||||||||| ||  |||| ||||| |||||||||    
T  29943332 tcaagttctgctcctggatcatcatctaacaagcaacaacaggaaactcctgcttatgagataaaaggaagaaccgtgtccttggaggaatgggaa 29943427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 29992486 - 29992581
Alignment:
Q  98 tcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    ||||| |||| ||||| |||| | || |||| ||||||||| ||| ||||||| ||||||||||||||||| ||  |||| ||||| |||||||||    
T  29992486 tcaagttctgctcctggatcatcatctaacaagcaacaacaggaaactcctgcttatgagataaaaggaagaaccgtgtccttggaggaatgggaa 29992581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 16387587 - 16387640
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||| |||||||||    
T  16387587 gaagctcctgcctatgagataaagggaagaaccatgtccttggaggaatgggaa 16387640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 7800734 - 7800822
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    |||||||||||| | || ||||||||||| | ||| |||||||| || ||||| ||||| ||||||||  | ||||||||| |||||||    
T  7800734 aacatgcaacaagaagaggctcctgcctacgtgatcaaaggaagaaccatgtccttggaggaatgggatttaaagattcaatcagaaaa 7800822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 17906217 - 17906305
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    ||||||||| || | || ||||||||||| | ||| |||||||| || ||||| ||||||||||||||  | ||||||||| |||||||    
T  17906217 aacatgcaataagaagaggctcctgcctacgtgattaaaggaagaaccatgtccttggaagaatgggatttaaagattcaatcagaaaa 17906305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 17963884 - 17963781
Alignment:
Q  98 tcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactca 197  Q
    |||||||||| |||||||||||| || ||    |||||||| ||| ||||||| ||||| || || ||||| || ||||| ||||||||||||||| | |    
T  17963884 tcaagctctgctcctgaatcaacatcaaat---caacaacaagaaactcctgcgtatgaaatcaagggaagaaccatgtccttggaagaatgggaattga 17963788  T
Q  198 agattca 204  Q
    |||||||    
T  17963787 agattca 17963781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 12954623 - 12954710
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagacttca 227  Q
    ||||| ||||| ||||| || ||||| |||||||||||  | ||||||||||| || ||||||||||| || || ||| |||||||||    
T  12954623 gaagcacctgcgtatgaaatcaaagggaggactatgtccctagaagaatgggaccttaagattcaaactgagaatccagtagacttca 12954710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 13075168 - 13075065
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacag 209  Q
    |||| |||| |||| |||||||||||| | || ||||||||||| | ||| |||||||| || ||||| ||||| ||||| ||  | ||||||||| |||    
T  13075168 cctggatcatcttcaaacatgcaacaagaagaggctcctgcctacgtgattaaaggaagaaccatgtccttggaggaatgagatttgaagattcaatcag 13075069  T
Q  210 aaaa 213  Q
    ||||    
T  13075068 aaaa 13075065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 16667096 - 16667190
Alignment:
Q  98 tcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||| |||| ||||| |||| | || |||| ||||||| | ||| |||||||||| |||||||||||||| || ||||| ||||| || |||||    
T  16667096 tcaagttctgctcctggatcatcgtctaacaagcaacaataagaacctcctgcctacgagataaaaggaagaaccatgtccttggaggagtggga 16667190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 18137684 - 18137855
Alignment:
Q  143 gctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagacttcaaatcactagccttcc 242  Q
    |||||||  ||||| || |||||||| ||  |||||||||||||||||||  | | ||||||||  ||||| ||| |||||||||| |   |||| || |    
T  18137684 gctcctgtgtatgaaatcaaaggaagaaccgtgtctttggaagaatgggatttaatgattcaaa-ggaaaatccagtagacttcaagtgtttagcgtttc 18137782  T
Q  243 atggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatacttcaatttcttaaatggaccaac 315  Q
    ||||||||||||| || |  |  || ||||||||||||||| || | ||||||||  | || |||||||||||    
T  18137783 atggctgtgacattagaagattctacgaagcacaaggcttattagattacttcaaaatgttgaatggaccaac 18137855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 37870598 - 37870550
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| || |||||| | |||||||||||    
T  37870598 ctcctgcgtatgagataaaaggaagaaccatgtctattgaagaatggga 37870550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 37879116 - 37879068
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| || |||||| | |||||||||||    
T  37879116 ctcctgcgtatgagataaaaggaagaaccatgtctattgaagaatggga 37879068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 93 - 315
Target Start/End: Original strand, 19166345 - 19166567
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||||||||||||| || || |||||||||||||| |||||||||| |||    
T  19166345 catcatcaagctctgctcctggatcatcatccaacatgcaacaacaagaagctcctgcctatgaaattaagggaaggactatgtcattggaagaatagga 19166444  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     |||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| | |||    
T  19166445 tctcaagattcaaacggaaaacccagtagatttcaagtcactagccttccatggctgtgacatcagcaagtactacgaagcacaaggcttagtagattac 19166544  T
Q  293 ttcaatttcttaaatggaccaac 315  Q
    ||||| |||||||||||||||||    
T  19166545 ttcaaattcttaaatggaccaac 19166567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 93 - 315
Target Start/End: Original strand, 21131015 - 21131237
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||||||| ||||| |||| | || |||| ||||||||  ||||| ||  | |||||||| |||||||| |||||||| || |||||||||||    
T  21131015 catcatcaagctctgctcctgcatcatcatcaaacacgcaacaaccagaagcaccaacatatgagattaaaggaagaactatgtccttagaagaatggga 21131114  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     || ||| |||||||||| |||||  |||| |||||||| ||||||||||||||| |||||||||| ||||| || |||||||||||||||||| |||||    
T  21131115 tctgaaggttcaaacagagaaccccgtagatttcaaatctctagccttccatggccgtgacatcagcaagtactacgaagcacaaggcttagtagaatac 21131214  T
Q  293 ttcaatttcttaaatggaccaac 315  Q
    ||||| ||  | |||||||||||    
T  21131215 ttcaagtttctgaatggaccaac 21131237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 95 - 317
Target Start/End: Original strand, 21212377 - 21212597
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaac 194  Q
    ||||||||||||| ||||| |||| | || |||||||||||||  ||||||||||| || ||||| |||||||| |||||||| ||  ||||||| || |    
T  21212377 tcatcaagctctgctcctggatcatcatcaaacatgcaacaactagaagctcctgcgtacgagattaaaggaagaactatgtcctt--aagaatgtgatc 21212474  T
Q  195 tcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatactt 294  Q
    | ||| |||||||||| |||||  |||| |||||||| |||||||| ||||| ||||||||||| || || || |||||| ||||||||||| |||||||    
T  21212475 taaaggttcaaacagagaaccccgtagatttcaaatctctagcctttcatggttgtgacatcagcaattactacgaagcaaaaggcttagtagaatactt 21212574  T
Q  295 caatttcttaaatggaccaacct 317  Q
     || ||  | |||||||||||||    
T  21212575 aaagtttctgaatggaccaacct 21212597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 19182996 - 19182948
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| || |||||| | |||||||||||    
T  19182996 ctcctgcgtatgagataaaaggaagaaccatgtctattgaagaatggga 19182948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 95 - 315
Target Start/End: Complemental strand, 11239734 - 11239514
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaac 194  Q
    |||||||||||||||||||||||  | ||||||||||||||||  ||||| ||||| |||||||||||||||||||| ||||| || || |||||||| |    
T  11239734 tcatcaagctctgttcctgaatcgtcatccaacatgcaacaaccagaagcgcctgcttatgagataaaaggaaggaccatgtcgttagaggaatgggatc 11239635  T
Q  195 tcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatactt 294  Q
    ||||||||||||||||||||||| | || ||||| ||||||||||| ||||||||| ||||||| ||||| || ||| |||||||||||||| |||||||    
T  11239634 tcaagattcaaacagaaaacccagtggatttcaagtcactagcctttcatggctgtaacatcagcaagtactacgaaacacaaggcttagtagaatactt 11239535  T
Q  295 caatttcttaaatggaccaac 315  Q
    ||| |||||||||||||||||    
T  11239534 caagttcttaaatggaccaac 11239514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 315
Target Start/End: Complemental strand, 22380113 - 22379950
Alignment:
Q  152 tatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtg 251  Q
    ||||| || |||||||| || |||||||| ||||||||||| || ||| |||||||||| |||||| | || ||||||||  ||||||||||||||||||    
T  22380113 tatgaaattaaaggaagaaccatgtctttagaagaatgggatcttaaggttcaaacagagaacccagttgatttcaaatcgttagccttccatggctgtg 22380014  T
Q  252 acatcaggaagtattatgaagcacaaggcttagtaaaatacttcaatttcttaaatggaccaac 315  Q
    ||||||| ||||| || |||||||||||||||||| |||||||||| ||| | |||||||||||    
T  22380013 acatcagcaagtactacgaagcacaaggcttagtagaatacttcaagttcctgaatggaccaac 22379950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 22290125 - 22290028
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || |||| ||||||||| ||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  22290125 tcatcaagttctgctcctggatcatcatctaacaagcaacaacaggaaactcctgcctatgagataaaaggaagaaccatgtccttggaggaatggga 22290028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 18922099 - 18922201
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacag 209  Q
    |||| |||| |||| |||||||||||||| || |||||| ||||||| || |||||||| || ||||| ||||| ||||||||||| || |||||| |||    
T  18922099 cctggatcatcttcaaacatgcaacaacaagaggctcctacctatgaaatcaaaggaagaaccatgtccttggaggaatgggaactgaaaattcaatcag 18922198  T
Q  210 aaa 212  Q
    |||    
T  18922199 aaa 18922201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 21123629 - 21123515
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||||||| || || |||| | ||||||||||||||||  ||||| ||||| ||||| || |||||||| || ||||| ||||| ||||| ||    
T  21123629 catcatcaagctctgctcatggatcatcatccaacatgcaacaaccagaagcgcctgcttatgaaattaaaggaagaaccatgtccttggaggaatgaga 21123530  T
Q  193 actcaagattcaaac 207  Q
     || ||| |||||||    
T  21123529 tctaaaggttcaaac 21123515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 18830964 - 18831076
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaac 194  Q
    |||||||| |||| ||||| |||| | || |||| | ||||||| ||| ||||||| || |||||||||||||| || ||||| ||||| ||||||||      
T  18830964 tcatcaagttctgctcctggatcatcatcaaacaagtaacaacaagaaactcctgcatacgagataaaaggaagaaccatgtccttggaggaatgggatt 18831063  T
Q  195 tcaagattcaaac 207  Q
    | |||||||||||    
T  18831064 tgaagattcaaac 18831076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 26037703 - 26037631
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    |||||||||||||||||| |||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  26037703 gaagctcctgcctatgagttaaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 26037631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 25731536 - 25731603
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||| ||| ||||| ||||||||||| |||||||| |||||||| || ||||| ||||| ||||||||    
T  25731536 aacaagcagcaacaagaagctcctgcttatgagattaaaggaagaaccatgtccttggaggaatggga 25731603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 4635013 - 4634961
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||| || |||||||| ||||| || ||||| ||||||||||||||    
T  4635013 gaagctcctgcttacgagataaagggaagaaccatgtccttggaagaatggga 4634961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 12369815 - 12369727
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    |||||||||||| | || ||||||||||  | ||| |||||||| || ||||| ||||| ||||||||  | ||||||||| |||||||    
T  12369815 aacatgcaacaagaagaggctcctgcctgcgtgatcaaaggaagaaccatgtccttggaggaatgggatttaaagattcaatcagaaaa 12369727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 20036586 - 20036674
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    |||||||||||| | || |||| |||||| | ||| |||||||| || ||||| ||||| ||||||||  | ||||||||| |||||||    
T  20036586 aacatgcaacaagaagaggctcttgcctacgtgattaaaggaagaaccatgtccttggaggaatgggatttgaagattcaatcagaaaa 20036674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 25797962 - 25797882
Alignment:
Q  131 caacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaa 211  Q
    |||||||| || ||||||||||| || || |||||||| || ||||| ||||| ||||||||| | || |||||| |||||    
T  25797962 caacaacaagaggctcctgcctacgaaatcaaaggaagaaccatgtccttggaggaatgggaattaaaaattcaatcagaa 25797882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 32307760 - 32307812
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||| || |||||||| ||||| || ||||| ||||||||||||||    
T  32307760 gaagctcctgcttacgagataaagggaagaaccatgtccttggaagaatggga 32307812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 93 - 315
Target Start/End: Original strand, 30881 - 31103
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||| |||||||||||||||| |||| | || ||||||||||| |  ||||||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  30881 catcttcaagctctgttcctggatcatcgtcaaacatgcaacagccagaagctcctgcgtatgagttaaaaggaagaaccatgtctttggaagaatggga 30980  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     || ||| ||||||||||||| ||  | || |||||||  |||||||| ||||| ||||||||||| ||||| || |||||||||| ||||||| |||||    
T  30981 tctaaaggttcaaacagaaaatcccgttgatttcaaatatctagcctttcatggatgtgacatcagcaagtactacgaagcacaagccttagtagaatac 31080  T
Q  293 ttcaatttcttaaatggaccaac 315  Q
    ||||| ||||| |||||||||||    
T  31081 ttcaagttcttgaatggaccaac 31103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 93 - 315
Target Start/End: Original strand, 162278 - 162500
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||||| ||||||||||  ||| | || |||||||||||||  ||| | ||||| ||||| || |||||||| |||||||| || || ||||||||    
T  162278 catcatcaagttctgttcctggttcatcgtcaaacatgcaacaaccagaaacgcctgcgtatgaaatcaaaggaagaactatgtccttagaggaatggga 162377  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     || ||| ||||||||| ||| ||| | || ||||||||| ||||||| ||||| ||||||||||| ||||| || |||||||||||||||||| |||||    
T  162378 tctgaaggttcaaacaggaaatccacttgatttcaaatcattagcctttcatggatgtgacatcagcaagtactacgaagcacaaggcttagtagaatac 162477  T
Q  293 ttcaatttcttaaatggaccaac 315  Q
    ||||| ||  |||||||||||||    
T  162478 ttcaaatttctaaatggaccaac 162500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 21292410 - 21292271
Alignment:
Q  173 atgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaag 272  Q
    |||||||||||||||||||| || ||| |||||||||| |||||| | || ||||||||  ||||||||||| | ||||||||||| ||||| || ||||    
T  21292410 atgtctttggaagaatgggatcttaaggttcaaacagagaacccagttgatttcaaatcgttagccttccatagatgtgacatcagcaagtactacgaag 21292311  T
Q  273 cacaaggcttagtaaaatacttcaatttcttaaatggacc 312  Q
    |||||||| ||||| |||||||||| ||||| ||||||||    
T  21292310 cacaaggcctagtagaatacttcaagttcttgaatggacc 21292271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 18157673 - 18157601
Alignment:
Q  120 cttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||| |||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| ||||||||    
T  18157673 cttcaaacatgcaacaacaagaggctcctgcctacgagattaaaggaaggaccatgtctttggaggaatggga 18157601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 286
Target Start/End: Complemental strand, 19933280 - 19933119
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagact 224  Q
    |||||||||||| | |  ||||| || ||||| ||||| ||||| |||||||| || || || |||||  | ||||||||||| ||||||||| | || |    
T  19933280 aacatgcaacaagaagctgctccagcttatgacataaagggaagaactatgtcattagaggagtgggatttgaagattcaaactgaaaacccagtggatt 19933181  T
Q  225 tcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagta 286  Q
    ||| ||| ||||| || ||||| |||||||| || |  || || |||||||||||| |||||    
T  19933180 tcacatctctagcatttcatggatgtgacattagtagatactacgaagcacaaggcctagta 19933119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 23370127 - 23370030
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||  |||||||||| |||| | || |||| |||||| || ||| |||| |||||||| ||||||||||| || |||||| |||| ||||||||    
T  23370127 tcatcaacttctgttcctggatcatcatctaacaagcaacagcaggaaactccagcctatgaaataaaaggaagaaccatgtctctggaggaatggga 23370030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 32084436 - 32084508
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  32084436 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 32084508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 23466012 - 23466106
Alignment:
Q  115 atcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    |||| |||| ||||||||||||   || ||||||||||||||||| |||||||| || ||||| ||||| || |||||| | || |||||| ||||||    
T  23466012 atcatcttcaaacatgcaacaa---gaggctcctgcctatgagatcaaaggaagaaccatgtccttggaggattgggaattaaaaattcaatcagaaa 23466106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 25680679 - 25680762
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    |||| |||| |||| |||||||||||||| || |||||||||||  | || |||||||| || ||||| ||||| |||||||||    
T  25680679 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctaaaaaattaaaggaagaaccatgtccttggaggaatgggaa 25680762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 3837041 - 3836959
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtc 177  Q
    |||||||| |||||||||| |||| | || |||| |||||| || ||| |||| |||||||| ||||||||||| || |||||    
T  3837041 tcatcaagttctgttcctggatcatcatctaacaagcaacagcaggaaactccagcctatgaaataaaaggaagaaccatgtc 3836959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 19422491 - 19422411
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaa 205  Q
    |||||||||||| | || ||||||||||| | ||| |||||||| || ||||| ||||| ||||||||  | |||||||||    
T  19422491 aacatgcaacaagaagaggctcctgcctacgtgattaaaggaagaaccatgtccttggaggaatgggatttgaagattcaa 19422411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 4421720 - 4421810
Alignment:
Q  227 aaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatacttcaatttcttaaatggaccaacct 317  Q
    |||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||| |||||||||| ||  |||||||||||||||    
T  4421720 aaatcactagccttccatggctgtgacatcagcaagtactacgaagcacaagacttagtagaatacttcaagtttctaaatggaccaacct 4421810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 25207802 - 25207869
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||||||||| |||||||||||||| ||||| |||||||| || ||||| ||||| ||||||||    
T  25207802 aacatgcaacaacaagaagctcctgcctacgagattaaaggaagaaccatgtccttggaggaatggga 25207869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 18432701 - 18432604
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || |||| ||||||||| ||| |||| ||||| |||||||||||||| || ||||| ||||| ||||||||    
T  18432701 tcatcaagttctgctcctggatcatcatctaacaagcaacaacaggaaactcccgcctacgagataaaaggaagaaccatgtccttggaggaatggga 18432604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 9163709 - 9163621
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    |||||||||||| | || ||||||||||| | ||| |||||||| || ||||| ||||||||||||||  | ||||||||| |||||||    
T  9163709 aacatgcaacaagaagaggctcctgcctacgtgattaaaggaagaaccatgtccttggaagaatgggatttgaagattcaatcagaaaa 9163621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 1991670 - 1991598
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  1991670 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 1991598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 16553395 - 16553458
Alignment:
Q  234 tagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatacttcaa 297  Q
    ||||||||||||| |||||||| || || || || |||||||||||||||||| | ||||||||    
T  16553395 tagccttccatggatgtgacataagtaaatactacgaagcacaaggcttagtagactacttcaa 16553458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 16612267 - 16612204
Alignment:
Q  234 tagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatacttcaa 297  Q
    ||||||||||||| |||||||| || || || || |||||||||||||||||| | ||||||||    
T  16612267 tagccttccatggatgtgacataagtaaatactacgaagcacaaggcttagtagactacttcaa 16612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 9437382 - 9437334
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| || |||||| | |||||||||||    
T  9437382 ctcctgcgtatgagataaaaggaagaaccatgtctattgaagaatggga 9437334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 312
Target Start/End: Original strand, 11596 - 11815
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||||||| ||||| |||| | || |||||||||||||   |||| ||||| ||||| || |||||||| || ||||||||||||||||||||    
T  11596 catcatcaagctctgctcctggatcatcatcaaacatgcaacaaccaaaagcccctgcttatgaaatcaaaggaagaaccatgtctttggaagaatggga 11695  T
Q  193 actcaagattcaaacagaaaacccaatagacttcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatac 292  Q
     || ||| ||||||| ||| | ||| | || ||    ||  |||| |  ||||| ||||| ||||| ||||| || |||||||||||||||||| |||||    
T  11696 tcttaaggttcaaacggaatatccagttgattttgcttctttagcttatcatggatgtgatatcagcaagtactacgaagcacaaggcttagtagaatac 11795  T
Q  293 ttcaatttcttaaatggacc 312  Q
    ||||| ||  ||||||||||    
T  11796 ttcaaatttctaaatggacc 11815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1078 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 445 - 541
Alignment:
Q  93 catcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatg 189  Q
    ||||||||||||||| ||||| |||  ||||||||||||||||||  ||||| ||||| ||||||||||||||||| || ||||| ||||| |||||    
T  445 catcatcaagctctgctcctggatcgtcttccaacatgcaacaaccagaagcgcctgcttatgagataaaaggaagaaccatgtccttggaggaatg 541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0719 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0719
Description:

Target: scaffold0719; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 3325 - 3422
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || |||| ||||||||| ||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  3325 tcatcaagttctgctcctggatcatcatctaacaagcaacaacaggaaactcctgcctatgagataaaaggaagaaccatgtccttggaggaatggga 3422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 312
Target Start/End: Original strand, 131324 - 131511
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagact 224  Q
    |||||||||||||| || |||||||  ||||| ||||||||||| || |||||||||||||||||||| || ||| |||||||| |||   |  | || |    
T  131324 aacatgcaacaacaagatgctcctggttatgaaataaaaggaagaaccatgtctttggaagaatgggatcttaaggttcaaacaaaaatttcggttgatt 131423  T
Q  225 tcaaatcactagccttccatggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatacttcaatttcttaaatggacc 312  Q
    |    ||  |||| |  ||||| ||||| ||||| ||||| || |||||||||||||||||| |||| ||||| || |||||||||||    
T  131424 tttcttccttagcttatcatggatgtgatatcagcaagtactacgaagcacaaggcttagtagaataattcaagtttttaaatggacc 131511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 17450814 - 17450731
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    |||| |||| |||| |||||||||||||| || ||||||||||||||||| |||||||| || ||||| ||||| |||||||||    
T  17450814 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctatgagatcaaaggaagaaccatgtccttggaggaatgggaa 17450731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 20786840 - 20786927
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    |||||||||||| | || |||||||||||||||||||| ||||| || ||||| ||||| |||||||| || ||||||||| ||||||    
T  20786840 aacatgcaacaagaagaggctcctgcctatgagataaagggaagaaccatgtccttggaggaatgggatcttaagattcaatcagaaa 20786927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 21418461 - 21418364
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || || | ||||||||| ||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  21418461 tcatcaagttctgctcctggatcatcatctaataagcaacaacaggaaactcctgcctatgagataaaaggaagaaccatgtccttggaggaatggga 21418364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 23402705 - 23402790
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacaga 210  Q
    |||||||||||||| || |||||||||||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| ||||    
T  23402705 aacatgcaacaacaagaggctcctgcctatgaaatcaaaggtagaaccatgtccttggaggaatgggaattaaaaattcaatcaga 23402790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 15746795 - 15746867
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  15746795 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 15746867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 17613889 - 17613961
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  17613889 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 17613961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 17725746 - 17725818
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  17725746 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 17725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 20558543 - 20558631
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    |||||||||||| | || ||||||||||| | ||| |||||||| || ||||| ||||| ||||||||  | ||||||||| |||||||    
T  20558543 aacatgcaacaagaagaggctcctgcctacgtgattaaaggaagaaccatgtccttggaggaatgggatttgaagattcaatcagaaaa 20558631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 31355363 - 31355435
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  31355363 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 31355435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 37734001 - 37733929
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  37734001 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 37733929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 34058747 - 34058797
Alignment:
Q  143 gctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    ||||||||||||||||| |||||||| || ||||| ||||| |||||||||    
T  34058747 gctcctgcctatgagatcaaaggaagaaccatgtccttggaggaatgggaa 34058797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 24932291 - 24932203
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaa 213  Q
    |||||||||||| | || ||||||||||| | ||| ||| |||| || ||||| ||||| ||||||||  | ||||||||| |||||||    
T  24932291 aacatgcaacaagaagaggctcctgcctacgtgattaaaagaagaaccatgtccttggaggaatgggatttgaagattcaatcagaaaa 24932203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 34778707 - 34778755
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| || |||||| | |||||||||||    
T  34778707 ctcctgcgtatgagataaaaggaagaaccatgtctattgaagaatggga 34778755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 36694525 - 36694577
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||| || |||||||| ||||| || ||||| ||||||||||||||    
T  36694525 gaagctcctgcttacgagataaagggaagaaccatgtccttggaagaatggga 36694577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 19575210 - 19575131
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatg 189  Q
    |||| |||| |||| |||||||||||||| || ||||||||||||||||| |||||||| || ||||| ||||| |||||    
T  19575210 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctatgagatcaaaggaagaaccatgtccttggaggaatg 19575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 3377110 - 3377040
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaact 195  Q
    |||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||    
T  3377110 aacatgcaacaacaagaggctcctgcctacgagatcaaaggaagaaccatgtccttggaggaatgggaact 3377040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 10294879 - 10294782
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||| || |||| ||||| |||| | || |||| |||| |||| ||| |||||||||||||||| |||||||| || ||||| ||||| ||||||||    
T  10294879 tcatctagttctgctcctggatcatcatctaacaagcaataacaagaaactcctgcctatgagattaaaggaagaaccatgtccttggaggaatggga 10294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 11519317 - 11519220
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || |||| | ||||||| ||| ||||||||||  ||||||||||||| || ||||| ||||| ||||||||    
T  11519317 tcatcaagttctgctcctggatcatcatctaacaagtaacaacaagaaactcctgcctacaagataaaaggaagaaccatgtccttggaggaatggga 11519220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 18759199 - 18759271
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  18759199 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 18759271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 24644473 - 24644401
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  24644473 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 24644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 27192042 - 27191970
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  27192042 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 27191970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 55751958 - 55752030
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  55751958 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaacattcaatcagaaa 55752030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1362 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1362
Description:

Target: scaffold1362; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 163 - 245
Alignment:
Q  110 cctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||| |||| |||| |||||||||||||| || ||||||||||| ||||| || |||||||| ||||| ||||| ||||||||    
T  163 cctggatcatcttcaaacatgcaacaacaagaggctcctgcctacgagattaagggaaggaccatgtccttggaggaatggga 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 6321 - 6418
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | ||  ||| ||||||||| ||| |||||||||| |||||||||||||| || ||||| ||||| ||||||||    
T  6321 tcatcaagttctgctcctggatcatcatctgacaagcaacaacaggaaactcctgcctacgagataaaaggaagaaccatgtccttggaggaatggga 6418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0410 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0410
Description:

Target: scaffold0410; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 10736 - 10639
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||||||||| |||||| || |||| |||||| || ||| |||| |||||||| ||||||||||| || |||||  |||| ||||||||    
T  10736 tcatcaagttctgttcctggatcaacatctaacaagcaacagcaggaaactccagcctatgaaataaaaggaagaacaatgtccctggaggaatggga 10639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 30219 - 30122
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || |||| ||||||||| ||| |||| ||||| |||||||||||||| || ||||| ||||| ||||||||    
T  30219 tcatcaagttctgctcctggatcatcatctaacaagcaacaacaagaaactcccgcctacgagataaaaggaagaaccatgtccttggaggaatggga 30122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 179667 - 179570
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||| || |||| ||||| |||| | || |||| ||||||||| |||||||||||||| ||||| |||||||| || ||||| ||||| ||||||||    
T  179667 tcatctagttctgctcctggatcatcatctaacaagcaacaacaagaagctcctgcctacgagattaaaggaagaaccatgtccttggaggaatggga 179570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 22748192 - 22748289
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| |||| ||||| |||| | || |||| ||||||||| |||  ||||||||| |||||||||||||| || ||||| ||||| ||||||||    
T  22748192 tcatcaagttctgctcctggatcatcatctaacaagcaacaacaggaaattcctgcctacgagataaaaggaagaaccatgtccttggaggaatggga 22748289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 22767911 - 22767814
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||| || |||| ||||| |||| | || |||| ||||||||| |||||||||||||| ||||| |||||||| || ||||| ||||| ||||||||    
T  22767911 tcatctagttctgctcctggatcatcatctaacaagcaacaacaagaagctcctgcctacgagattaaaggaagaaccatgtccttggaggaatggga 22767814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 26871273 - 26871205
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    |||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||    
T  26871273 aacatgcaacaacaagaggctcctgcctacgagattaaaggaagaaccatgtccttggaggaatgggaa 26871205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 18941974 - 18941905
Alignment:
Q  141 aagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacaga 210  Q
    |||||||||| |||||||| |||||||| || || | |||||||||||| || || ||||||||||||||    
T  18941974 aagctcctgcatatgagattaaaggaagaaccatatatttggaagaatgagatcttaagattcaaacaga 18941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 35257085 - 35257013
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  35257085 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaatattcaatcagaaa 35257013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 35267709 - 35267637
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    ||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | || |||||| ||||||    
T  35267709 gaagctcctgcttatgagataaagggaagaaccatgtccttggaggaatgggaattaaatattcaatcagaaa 35267637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 29248312 - 29248264
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| || |||||| | |||||||||||    
T  29248312 ctcctgcgtatgagataaaaggaagaaccatgtctattgaagaatggga 29248264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 18342 - 18274
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    |||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||    
T  18342 aacatgcaacaacaagaggctcctgcctacgagattaaaggaagaaccatgtccttggaggaatgggaa 18274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 23429 - 23361
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaa 193  Q
    |||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||    
T  23429 aacatgcaacaacaagaggctcctgcctacgagattaaaggaagaaccatgtccttggaggaatgggaa 23361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 356 - 443
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaa 212  Q
    |||||||||||| | |||||||||||||| | |||||| ||||| || ||||| ||||| ||||||||  | ||||||||| ||||||    
T  356 aacatgcaacaagaagaagctcctgcctacgtgataaagggaagaaccatgtccttggaggaatgggatttaaagattcaatcagaaa 443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 131850 - 131759
Alignment:
Q  98 tcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatg 189  Q
    ||||| |||| ||||| |||| | || |||| ||| ||||| ||| ||||||||||||||||||||||||| || ||||| ||||| |||||    
T  131850 tcaagttctgctcctggatcatcatctaacaagcatcaacaagaaactcctgcctatgagataaaaggaagaaccatgtccttggaggaatg 131759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 220482 - 220385
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||| | || ||||| |||| | || |||| ||||||||| ||| |||||||||| |||||||||||||| |  ||||| ||||| ||||||||    
T  220482 tcatcaagttatgctcctggatcatcatctaacaagcaacaacaagaaactcctgcctacgagataaaaggaagaatcatgtccttggaggaatggga 220385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 49681 - 49729
Alignment:
Q  144 ctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||| ||||||||||||||||| ||||||||| | |||||||||||    
T  49681 ctcctgcttatgagataaaaggaagaactatgtctattgaagaatggga 49729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 408 - 475
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||||||| | || ||||||||||||||||| || ||||| || ||||| ||||| ||||||||    
T  408 aacatgcaacaagaagaggctcctgcctatgagattaagggaagaaccatgtccttggaggaatggga 475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 8663 - 8730
Alignment:
Q  125 aacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    |||||||||||| | || ||||||||||||||||| || ||||| || ||||| ||||| ||||||||    
T  8663 aacatgcaacaagaagaggctcctgcctatgagattaagggaagaaccatgtccttggaggaatggga 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 3769 - 3839
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacaga 210  Q
    ||||||||||| ||||| || |||| ||||||||||   || ||||||||||| || ||||||||||||||    
T  3769 gaagctcctgcttatgaaatcaaagaaaggactatgaaattagaagaatgggatcttaagattcaaacaga 3839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 297
Target Start/End: Complemental strand, 13254 - 13100
Alignment:
Q  143 gctcctgcctatgagataaaaggaaggactatgtctttggaagaatgggaactcaagattcaaacagaaaacccaatagacttcaaatcactagccttcc 242  Q
    |||||||  ||||||||||| ||||| || ||||| ||||| ||||||||  | ||||||||||| ||||  ||| |||| |||| ||| ||||| | ||    
T  13254 gctcctggatatgagataaagggaagaaccatgtccttggaggaatgggatttaaagattcaaactgaaagtccagtagatttcacatctctagcatacc 13155  T
Q  243 atggctgtgacatcaggaagtattatgaagcacaaggcttagtaaaatacttcaa 297  Q
    | || || |||||  | || || ||||||||||||||  | |||| |||||||||    
T  13154 acggatgcgacattggaaaatactatgaagcacaagggcttgtaagatacttcaa 13100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 3077 - 3174
Alignment:
Q  95 tcatcaagctctgttcctgaatcaacttccaacatgcaacaacatgaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||| || |||| ||||| |||| | || |||| ||||||||| ||||||||||| ||||| || || ||||| || ||||| ||||| ||||||||    
T  3077 tcatctagttctgctcctggatcatcatcgaacaagcaacaacaagaagctcctgcttatgaaattaagggaagaaccatgtccttggaggaatggga 3174  T

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Target: scaffold0322 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 5500 - 5552
Alignment:
Q  140 gaagctcctgcctatgagataaaaggaaggactatgtctttggaagaatggga 192  Q
    ||||||||||||||||||||||| ||||  || ||| | ||||||||||||||    
T  5500 gaagctcctgcctatgagataaagggaaaaaccatggccttggaagaatggga 5552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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