View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0909_low_16 (Length: 314)
Name: NF0909_low_16
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 74 - 314
Target Start/End: Complemental strand, 3811861 - 3811621
Alignment:
| Q |
74 |
aaagaagaagtggaaagttagtataaatgtaaaaaattacttaagttttcttcaccataatatctctagtctcttgagggacttgaggtagttgtatgtc |
173 |
Q |
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| T |
3811861 |
aaagaagaagtggaaagttagtataaatgtaaaaaattacttaagttttcttcaccataatatctctagtctcttgagggacttgaggtagttgtatgtc |
3811762 |
T |
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| Q |
174 |
aagaaagtagaggagatataagcatgaagtgacgaatcacaatttgtgagctatttttgtcnnnnnnncttatattatggttatgcacttgggctatagc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3811761 |
aagaaagtagaggagatataagcatgaagtgacgaatcacaatttgtgagctatttttgtctttttttcttatattatggttatgcacttgggctatagc |
3811662 |
T |
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| Q |
274 |
ttgatagaaattttctctccaacatcttaccatattatcca |
314 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| |
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| T |
3811661 |
ttgatagaaattttgtctccaacatcttaccatcttatcca |
3811621 |
T |
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