View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0909_low_19 (Length: 307)
Name: NF0909_low_19
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 29262656 - 29262720
Alignment:
| Q |
115 |
ttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacattttaaag |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29262656 |
ttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacattttaaag |
29262720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 27613227 - 27613279
Alignment:
| Q |
111 |
tttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaa |
165 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27613227 |
tttgttcctttcctgtc--gagctcatggaacttgggaagaaaatagttgatcaa |
27613279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 3062027 - 3062072
Alignment:
| Q |
100 |
aaacaagtagttttgttcctttcctctctcgagttcatggaacttg |
145 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
3062027 |
aaacaagtcgttttgttcctttcctctttcgggttcaaggaacttg |
3062072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 563 times since January 2019
Visitors: 6704