View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0909_low_26 (Length: 274)
Name: NF0909_low_26
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 52 - 247
Target Start/End: Complemental strand, 4487367 - 4487172
Alignment:
| Q |
52 |
agaaaaagaaagagattttgtaaattacctacaaaccacttgtccaaccatgtcactttatttttacacggattaagtaggacgaaccaacttaaatggt |
151 |
Q |
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| T |
4487367 |
agaaaaagaaagagattttgtaaattacctacaaaccactagtccaaccatgtcactttatttttacacggattaagtaggacgaaccaacttaaatggt |
4487268 |
T |
|
| Q |
152 |
agagttcaaaaccttaatttatcccatcttaaatgacagttaaatagttgtgctaataggcttaacatttttcacctctatctcttcatctcactc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
4487267 |
agagttcaaaaccttaatttatcccatcttaaatgacagttaaatagttgtgctaataggcttaacatttttcacccctatctcttcatgtcactc |
4487172 |
T |
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