View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0909_low_27 (Length: 269)
Name: NF0909_low_27
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_low_27 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 38812122 - 38811932
Alignment:
| Q |
78 |
taaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctaga |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38812122 |
taaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctaga |
38812023 |
T |
|
| Q |
178 |
acttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgatgatgatgtccatctcattggatgaagaagatgacttag |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||| |
|
|
| T |
38812022 |
acttgttcaccaagctctgatttaatccatgatggtggtggtgatgccgatgataatgatg-gcgttgaattggatgaagaagatgacttag |
38811932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 38810037 - 38809913
Alignment:
| Q |
78 |
taaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctaga |
177 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||| | |
|
|
| T |
38810037 |
taaatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatactcaaactctata |
38809938 |
T |
|
| Q |
178 |
acttgttcaccaagctctgatttaa |
202 |
Q |
| |
|
||||||||| |||| || ||||||| |
|
|
| T |
38809937 |
acttgttcaacaagttccgatttaa |
38809913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 38822967 - 38822847
Alignment:
| Q |
82 |
tcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatactcaaaatctagaactt |
181 |
Q |
| |
|
||||||||||||| ||||||| |||| | |||| | | ||||| |||||||||||||||||| ||| |||||||| |||||||||| |||| || || |
|
|
| T |
38822967 |
tcaagtaactcctacttgaaccagttgttattgatggtattctcaggatccaagagttcctctaataatttttcatccaaatactcaaactctataattt |
38822868 |
T |
|
| Q |
182 |
gttcaccaagctctgatttaa |
202 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
38822867 |
gttcaccaagctccgatttaa |
38822847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 655 times since January 2019
Visitors: 6705