View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0909_low_28 (Length: 260)

Name: NF0909_low_28
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0909_low_28
NF0909_low_28
[»] chr5 (1 HSPs)
chr5 (29-248)||(32229543-32229761)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 32229761 - 32229543
Alignment:
29 agaatggtagttttcatatacgttttgatggttttaaacttgtgaaacttcaagcattgtcgaaaaaactcattttttccttcttgtatttcttaatctt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
32229761 agaatggtagttttcatatacgttttgatggttttaaacttgtgaaacttcaagcattgtcgaaaaaactcattttttt-ttcttgtatttcttaatctt 32229663  T
129 caacaaatttaagtcacatagatcacattttctctaaaacacaacaagtacgtgtcttaatctttcaatttatcatatttgaatattcaagttgtgtatg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32229662 caacaaatttaagtcacatagatcacattttctctaaaacacaacaagtacgtgtcttaatctttcaatttatcatatttgaatattcaagttgtgtatg 32229563  T
229 ttgttgattaatttgatatt 248  Q
    ||||||||||||||||||||    
32229562 ttgttgattaatttgatatt 32229543  T

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