View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0909_low_29 (Length: 259)

Name: NF0909_low_29
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0909_low_29
NF0909_low_29
[»] chr5 (4 HSPs)
chr5 (37-240)||(41889557-41889767)
chr5 (40-236)||(41901542-41901738)
chr5 (38-240)||(32267369-32267571)
chr5 (61-218)||(20478107-20478264)
[»] chr8 (6 HSPs)
chr8 (37-240)||(27922401-27922604)
chr8 (63-240)||(18315276-18315453)
chr8 (151-240)||(17636404-17636493)
chr8 (62-239)||(21235476-21235653)
chr8 (61-239)||(28246299-28246475)
chr8 (95-216)||(34936190-34936311)
[»] chr6 (20 HSPs)
chr6 (61-229)||(14820610-14820778)
chr6 (61-229)||(14818299-14818467)
chr6 (61-218)||(7119074-7119231)
chr6 (61-218)||(7131552-7131709)
chr6 (60-240)||(6432077-6432257)
chr6 (54-240)||(6426421-6426607)
chr6 (65-218)||(10579761-10579915)
chr6 (61-239)||(11936279-11936457)
chr6 (61-239)||(11948259-11948437)
chr6 (65-229)||(6415887-6416051)
chr6 (61-240)||(6423134-6423313)
chr6 (60-219)||(6585261-6585420)
chr6 (60-189)||(6603256-6603385)
chr6 (61-213)||(6402777-6402929)
chr6 (61-240)||(6394781-6394960)
chr6 (63-229)||(19632358-19632524)
chr6 (63-216)||(7994209-7994362)
chr6 (84-240)||(6409946-6410102)
chr6 (193-239)||(12102315-12102361)
chr6 (151-239)||(9411362-9411450)
[»] chr3 (5 HSPs)
chr3 (71-240)||(51113784-51113953)
chr3 (71-228)||(13470747-13470904)
chr3 (54-240)||(51120896-51121082)
chr3 (61-240)||(51764443-51764622)
chr3 (124-239)||(1657231-1657346)
[»] chr4 (22 HSPs)
chr4 (62-240)||(7307778-7307956)
chr4 (71-240)||(546840-547009)
chr4 (63-240)||(8187094-8187271)
chr4 (65-239)||(553400-553574)
chr4 (61-239)||(1548428-1548606)
chr4 (62-239)||(570269-570446)
chr4 (61-240)||(1524489-1524665)
chr4 (65-240)||(55505111-55505283)
chr4 (72-220)||(640843-640991)
chr4 (65-237)||(55908734-55908906)
chr4 (61-239)||(644748-644925)
chr4 (175-240)||(12121460-12121525)
chr4 (168-240)||(1545797-1545869)
chr4 (61-240)||(7225886-7226065)
chr4 (178-240)||(1600453-1600515)
chr4 (175-240)||(1513410-1513475)
chr4 (74-125)||(1517614-1517665)
chr4 (65-240)||(1537770-1537945)
chr4 (191-240)||(1489364-1489413)
chr4 (72-121)||(6006255-6006304)
chr4 (66-166)||(370842-370942)
chr4 (192-240)||(1519145-1519193)
[»] scaffold0041 (1 HSPs)
scaffold0041 (61-216)||(39101-39256)
[»] chr1 (5 HSPs)
chr1 (149-240)||(52082586-52082677)
chr1 (69-210)||(7554413-7554554)
chr1 (143-240)||(52092776-52092873)
chr1 (92-216)||(43634858-43634979)
chr1 (156-239)||(19468503-19468586)
[»] chr2 (3 HSPs)
chr2 (65-237)||(1037670-1037842)
chr2 (65-237)||(45245091-45245263)
chr2 (159-240)||(32785775-32785856)
[»] scaffold0295 (1 HSPs)
scaffold0295 (65-237)||(630-802)
[»] chr7 (1 HSPs)
chr7 (61-240)||(15092154-15092333)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 41889767 - 41889557
Alignment:
Q  37 atgacaaccatccaaactgatcattctcagttgcgtgcagttctcta-------ccacatgattcactcccttctttgtgacatcataacaatttttaag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  41889767 atgacaaccatccaaactgatcattctcagttgcgtgcagttctctaatctctaccacatgattcactcccttctttgtgacatcataacaatttttaag 41889668  T
Q  130 taacaatttcgaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaact 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41889667 taacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaact 41889568  T
Q  230 ttaaagttcat 240  Q
    |||||||||||    
T  41889567 ttaaagttcat 41889557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 41901738 - 41901542
Alignment:
Q  40 acaaccatccaaactgatcattctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttc 139  Q
    |||||||| |||||| ||| |||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| || |||| ||||||||    
T  41901738 acaaccattcaaactaatctttctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttc 41901639  T
Q  140 gaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagt 236  Q
     |||| || |||||||||||||||||| |||||| || |||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  41901638 aaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 32267369 - 32267571
Alignment:
Q  38 tgacaaccatccaaactgatcattctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatt 137  Q
    ||||||||||  ||| | ||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  32267369 tgacaaccatagaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatt 32267468  T
Q  138 tcgaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagtt 237  Q
    || ||||||| |||||||||||||||||| |||||| || |||||| |||||| |||| | ||| |||||||| ||||||||||||||||||| ||||||    
T  32267469 tcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagtt 32267568  T
Q  238 cat 240  Q
    |||    
T  32267569 cat 32267571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 20478264 - 20478107
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||||||| |||||||| ||||| ||||| ||| |||| ||| ||||||||| ||  |||||||| ||||  | || | ||||||| |||||| || ||    
T  20478264 tctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattcctt 20478165  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctcca 218  Q
    ||||||  | | |||||||| || ||||| ||||||||||| ||||||||||||||||    
T  20478164 gagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 27922401 - 27922604
Alignment:
Q  37 atgacaaccatccaaactgatcattctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaat 136  Q
    |||||||||||||||||| ||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||| |||| |||||    
T  27922401 atgacaaccatccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaat 27922500  T
Q  137 ttcgaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagt 236  Q
    ||| ||||||| |||||||||||||||||| |||||| || |||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  27922501 ttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagt 27922600  T
Q  237 tcat 240  Q
    ||||    
T  27922601 tcat 27922604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 18315453 - 18315276
Alignment:
Q  63 tcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttga 162  Q
    ||||||| |||||||| ||||||||||  ||  |||| |||| |||||||||| ||||   ||  | ||||| || | ||||||  | ||||||||||||    
T  18315453 tcagttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttga 18315354  T
Q  163 gatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||  ||| | || |||||| ||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  18315353 gatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcat 18315276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 17636493 - 17636404
Alignment:
Q  151 acaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||||||||||  ||| |||| |||||||||||||  ||| | ||| |||||||||||||||||||||||||||| |||||||||    
T  17636493 acaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcat 17636404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 21235476 - 21235653
Alignment:
Q  62 ctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttg 161  Q
    |||||||| |||||||| ||||||||||||||||| ||  | || ||||||| ||||||||  | |||||||| || | |||||| || ||| |||||||    
T  21235476 ctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagtaacagttgcaaaagcctgcgacagctctttg 21235575  T
Q  162 agatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    | |||  ||| | |  ||| |  ||||||  ||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  21235576 aaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 28246475 - 28246299
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||||||| ||||| || || ||||||||  ||||||  || | ||||||| | | ||||  ||||||| ||| || | ||||||||| ||||||||||    
T  28246475 tctcagttgtgtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccgctacaactcttt 28246376  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||||||  ||| | || || ||  |||||| ||||| |||| |||| ||||||||||| ||||||||||| ||||||||    
T  28246375 gagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 28246299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 34936311 - 34936190
Alignment:
Q  95 actcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttg 194  Q
    ||||||||||  ||||||||| ||||||||| |||||| | || | ||||||| | ||||||||||| |||   ||| | ||||| ||| |||||| |||    
T  34936311 actcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttg 34936212  T
Q  195 tatatgataagttcaacacctc 216  Q
    ||||||| |||| |||||||||    
T  34936211 tatatgacaagtccaacacctc 34936190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 14820610 - 14820778
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    |||||| || |||||||| | ||||||||| ||||| ||||||| ||||||||||| ||| |||| |||||| |||  | ||||||| |||||| ||||     
T  14820610 tctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttg 14820709  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaact 229  Q
    |||||| |||||| ||||||||  ||||| ||||||| |||||||||||||||||| || |||||||||    
T  14820710 gagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaact 14820778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 14818299 - 14818467
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    |||||| || |||||||| ||||| ||||| ||||| ||||||| |||||||| || |||||||| |||||| |||  | |||||||  ||||| ||||     
T  14818299 tctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttg 14818398  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaact 229  Q
    |||||| |||||| ||||||||  ||||| ||||||| |||||||||||||||||| || ||| |||||    
T  14818399 gagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaact 14818467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 7119074 - 7119231
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| |||||||| ||| ||||||| |||||| | || |||||||||| |||||||| ||| ||||| | || | |||||||||||||| ||||     
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7119173  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctcca 218  Q
    ||||||  ||  | ||||||||| ||||| || |||| ||| ||||||||||||||||    
T  7119174 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7119231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 7131552 - 7131709
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| |||||||| ||| ||||||| |||||| | || |||||||||| |||||||| ||| ||||| | || | |||||||||||||| ||||     
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7131651  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctcca 218  Q
    ||||||  ||  | ||||||||| ||||| || |||| ||| ||||||||||||||||    
T  7131652 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7131709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 6432077 - 6432257
Alignment:
Q  60 ttctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctt 159  Q
    |||||| ||| ||||| || ||||||||| | ||||||||||||| |||||||| || |||||| |  || || | || |  |||||| |||||| ||||    
T  6432077 ttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctt 6432176  T
Q  160 tgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    | |||||  ||||| ||||||||| |||||  |||||| ||| ||||||||||||| ||  |||||||||| |||||||||    
T  6432177 taagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcat 6432257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 6426421 - 6426607
Alignment:
Q  54 tgatcattctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaaca 153  Q
    ||||| |||| ||||| |||||||| |||||||| || ||||| |||||| |||||||| | | |||||||| |||||| |||| | ||| ||  |||||    
T  6426421 tgatctttcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaaca 6426520  T
Q  154 actctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    | |||||||||||  |||||| |||||||| ||||   |||| | ||| || |||||||||||||  | |||||||  |||||||||    
T  6426521 attctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcat 6426607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 10579915 - 10579761
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccg-caacaactctttgag 163  Q
    ||||| |||||||| ||||||||||| || |||||||||||||||||    | ||| ||||| |||||  | ||| |||  ||| |||||| ||||||||    
T  10579915 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgag 10579816  T
Q  164 atcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctcca 218  Q
    |||  ||| | ||||| ||| ||||||||||||||||| ||||||||||||||||    
T  10579815 atcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 11936457 - 11936279
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| ||||| || || ||||||||  ||||||| || | ||||||| | | ||||  ||||||| ||| || | ||||||| | ||||||||||    
T  11936457 tctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactcttt 11936358  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||||||  ||| | || || |||||||||| ||||| |||| |||| ||||||||||| ||||||||||| ||||||||    
T  11936357 gagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 11948437 - 11948259
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| ||||| || || ||||||||  ||||||| || | ||||||| | | ||||  ||||||| ||| || | ||||||| | ||||||||||    
T  11948437 tctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactcttt 11948338  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||||||  ||| | || || |||||||||| ||||| |||| |||| ||||||||||| ||||||||||| ||||||||    
T  11948337 gagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 6415887 - 6416051
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| |||||||||||||||||||| |||||||||   | |||||||| || ||||  || |||||| | || | ||||||||| |||| |||||||||    
T  6415887 agttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgaga 6415986  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaact 229  Q
    ||  ||| |  |||| ||| | ||| ||||||| ||| ||||||||||||||||  |||||||||    
T  6415987 tcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaact 6416051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 6423134 - 6423313
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| ||||||||   ||||||| | |||| ||| || ||||| |||| || ||||| || |||||| | || | ||| ||| ||||||||||||    
T  6423134 tctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactcttt 6423233  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||  ||| | ||||| ||||  |||| |||||| ||| ||||||||||||||||  |||||||||| |||||||||    
T  6423234 gagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcat 6423313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 6585420 - 6585261
Alignment:
Q  60 ttctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctt 159  Q
    |||||||||| |||||  | ||||||||||| |||| |||||||| ||||||||  | ||||  ||| ||||| | || | ||||| |  ||||||||||    
T  6585420 ttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctt 6585321  T
Q  160 tgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaa 219  Q
    |||||||  ||| | ||||||||| ||||| ||||||| ||| |||||||| ||||||||    
T  6585320 tgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaa 6585261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 6603385 - 6603256
Alignment:
Q  60 ttctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctt 159  Q
    ||||||||||  ||||||| ||||||||||| |||||||| |||| |||||||| |||||||| ||| | ||| | || | |||||||   |||||||||    
T  6603385 ttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctt 6603286  T
Q  160 tgagatcttataaaatgtttcatcgtcaac 189  Q
    |||||||  ||| | ||||||||| |||||    
T  6603285 tgagatcgcatagactgtttcatcatcaac 6603256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 6402777 - 6402929
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||||||| || ||||| |||| |||||| ||| ||||||| | |||||||| |||||||| | | | ||| | |||| ||||||| | |||| |||||    
T  6402777 tctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattcttt 6402876  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacac 213  Q
    ||||||  ||| | ||||||||| ||||| || |||| ||| |||||||||||    
T  6402877 gagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 6394781 - 6394960
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| |||||||| ||||||||||| | ||| ||||| | ||||||||  | |||||| | ||||   |||| | ||||||| |||||| |||||    
T  6394781 tctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 6394880  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||  | |||  |||||||| |||||  |||||| ||| ||||||||||||||||  | |||||||  |||||||||    
T  6394881 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcat 6394960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 19632358 - 19632524
Alignment:
Q  63 tcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttga 162  Q
    |||||||  ||||||| |||||||| || ||||||||||||| ||||| || |  ||||||||| ||||| | || | ||||||| |||||| |||||||    
T  19632358 tcagttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttga 19632457  T
Q  163 gatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaact 229  Q
    ||||  | ||| |   ||||| ||||| |||||||| || |||| ||||||||| |  |||||||||    
T  19632458 gatcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaact 19632524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 7994362 - 7994209
Alignment:
Q  63 tcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttga 162  Q
    |||||||||||||||| ||||||||||| |||||||||| ||  || ||||||| ||||  || |||||| | || | |||| ||  ||||| |||||||    
T  7994362 tcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttga 7994263  T
Q  163 gatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctc 216  Q
    ||||  ||| | |||||| || | |||  |||||| ||| | ||||||||||||    
T  7994262 gatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctc 7994209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 6409946 - 6410102
Alignment:
Q  84 ccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaaatgtttcatc 183  Q
    ||||||| ||||||||||||| |||||||| || ||| || |  |  || | || | ||||||  |||||| |||||||||||  |||||  ||||||||    
T  6409946 ccacatgtttcactcccttctgtgtgacattatcacagttgtacaaaaatagttgcaaaagccgacaacaattctttgagatcacataaagagtttcatc 6410045  T
Q  184 gtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
     |||||  |||||| |||  |||||||||||| ||  |||||||||| |||||||||    
T  6410046 atcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcat 6410102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 12102315 - 12102361
Alignment:
Q  193 tgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 9411362 - 9411450
Alignment:
Q  151 acaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    |||| |||||||||||| ||| | | ||||||||  |||   ||||||||| ||||||||||||||||  |||||||| | ||||||||    
T  9411362 acaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttca 9411450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 51113953 - 51113784
Alignment:
Q  71 gtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttat 170  Q
    ||||| || ||||||||||| ||||||||||||| ||||||||  ||||||||||| ||||||| || | ||||||| ||||||||||| ||||||  ||    
T  51113953 gtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacat 51113854  T
Q  171 aaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    | | ||||||||| |||||  |||||| ||| ||||  |||||||||| ||||||| ||| |||||||||    
T  51113853 agagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcat 51113784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 13470904 - 13470747
Alignment:
Q  71 gtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttat 170  Q
    |||||||||||||||||||| ||||||||||  | |||||||| || ||||  || |||||| | || | ||||||| |||||| ||||||||||| |||    
T  13470904 gtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatat 13470805  T
Q  171 aaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaac 228  Q
    | | ||||| ||| | ||| ||||||| ||| ||||||||||||||||  ||||||||    
T  13470804 agagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaac 13470747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 51121082 - 51120896
Alignment:
Q  54 tgatcattctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaaca 153  Q
    |||||| ||||| ||| |||||||| ||||||||||| |||||||| || | ||||||||   ||||  |||  ||  |||||| | ||||||| | |||    
T  51121082 tgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgaca 51120983  T
Q  154 actctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||||||   ||| | | ||||||| |||||| ||||||  || ||||||||||||||||||||| |||||| |||||||||    
T  51120982 actctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcat 51120896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 51764622 - 51764443
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| |||||||| || |||||||| |||||||||||||   |||||| || ||||| ||  ||||| | || | |||||||||||||| |||||    
T  51764622 tctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattcttt 51764523  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||  ||| | ||||| ||| |||||||||||| |||| ||||  ||||||||||  || ||||||  |||||||||    
T  51764522 gagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcat 51764443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 1657231 - 1657346
Alignment:
Q  124 tttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttg 223  Q
    ||||||| ||| || | |||||||||  |||||||||||||||  ||| | || |  || ||||||| ||||| |||| |||| ||||||||||| ||||    
T  1657231 tttaagtgacagttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttg 1657330  T
Q  224 ggaactttaaagttca 239  Q
    ||||||| ||||||||    
T  1657331 ggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 7307778 - 7307956
Alignment:
Q  62 ctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttg 161  Q
    ||||||||||||||||| ||||||||||| |||| |||  || | ||||||  | |||||  ||  |||||||  | | ||||||  |||||||||||||    
T  7307778 ctcagttgcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcctacaacaactctttg 7307877  T
Q  162 agatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||| ||   | || |||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  7307878 agatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcat 7307956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 546840 - 547009
Alignment:
Q  71 gtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttat 170  Q
    |||||||| |||| |||||| ||||||||||||| |||||||| | |||| | ||  |||||||||| | ||||||| ||||||||||||||||||  ||    
T  546840 gtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcacat 546939  T
Q  171 aaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    | | ||||||||| |  ||  |||||  ||| ||||||| |||||||||||| ||||||| |||||||||    
T  546940 agagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcat 547009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 8187271 - 8187094
Alignment:
Q  63 tcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttga 162  Q
    |||||||||||||||| | ||||||||   |||||||||||  |||||| | |  ||||||||  |||||||| | | ||||||| ||||||||||||||    
T  8187271 tcagttgcgtgcagttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttga 8187172  T
Q  163 gatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
     ||   ||||| ||||| ||| |||||| |||||| ||| |||||||||||||||| ||||| || || |||||||||    
T  8187171 aattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcat 8187094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 553400 - 553574
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| |||||||| |||||||||||||||||||| || | ||||||||||  |||||     |  |||| || | |||||||  ||||||||||||| |    
T  553400 agttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaactctttgaaa 553499  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||  || || || |||||| |||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||    
T  553500 tcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 1548606 - 1548428
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||||||||| |||||| ||| | | ||| ||||||||||||| ||||| ||  | ||||  |||  ||||||| | | ||||||| ||||||||||||    
T  1548606 tctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactcttt 1548507  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||||||  ||  | ||||||||| ||||   |||||| ||| |||||||||||||||| |||||||| || ||||||||    
T  1548506 gagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 570269 - 570446
Alignment:
Q  62 ctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttg 161  Q
    |||||||| |||||||| ||||||||||||||||| ||  | || || |||| ||||||||  | |||||||| || | ||||||||| |||||||||||    
T  570269 ctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttg 570368  T
Q  162 agatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    | |||  ||| | |  ||| |  ||||||  ||||||||| |||||||||||||| | |||| |||||| ||||||||    
T  570369 aaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttca 570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 1524665 - 1524489
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||||||| |||||||| |||| ||||| |||||||||| ||| ||||||||   ||||| |    | ||||| || | ||||||| | |||||||| |    
T  1524665 tctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacat---aacaactacgcaataacagttgcaaaagcccacgacaactctgt 1524569  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    |||||| |||| | ||||||||| |||||  |||||  ||| || |||||||||||||| |||||||||| |||||||||    
T  1524568 gagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcat 1524489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 55505283 - 55505111
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| |||||||| |||| ||| || ||||||||||||| |||||||||    | |||||| | |||||| | | |||| || | |||| ||||||||     
T  55505283 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtccacgacaattctttgagg 55505187  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||  ||||| |||| |||||||||| ||||||||||| |||||||||||||| | || ||| ||| ||||||||||    
T  55505186 tcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcat 55505111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 640843 - 640991
Alignment:
Q  72 tgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttata 171  Q
    ||||||| ||||||||||||||||||||||||||||| |||| || ||||| ||  |||||||  | | |||| || |  ||| |||||||| ||   ||    
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  172 aaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaat 220  Q
     | ||||||||| ||||| ||||||| ||| ||||||||||||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaat 640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 55908906 - 55908734
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| |||||||| || || ||||| ||||| || |||| |||||| |||| ||||||||  || |||| ||   ||||||| |||||| |||||||||    
T  55908906 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 55908807  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagtt 237  Q
    || |||| | ||||||||| |||||   ||||| ||| ||||| |||||||| ||||  ||||||||||||||    
T  55908806 tcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtt 55908734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 644748 - 644925
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||||||| ||||| || || |||||||| |||||||| ||||  |||||| | | ||||  ||||||| ||| || |  ||||||||  |||||||||    
T  644748 tctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactcttt 644847  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    ||||||  ||||| || || ||||| |||| ||||| |||| ||||  |||||||||| ||||||||||| ||||||||    
T  644848 gagatcaaataaa-tgatttatcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 12121525 - 12121460
Alignment:
Q  175 tgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||| ||||| ||||||||||| ||||||||||| || | ||||||||||| |||||||||    
T  12121525 tgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcat 12121460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 1545797 - 1545869
Alignment:
Q  168 tataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    |||||| ||||||||| |||||| ||||| |  | |||||||||||||||| ||| |||||||||||||||||    
T  1545797 tataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcat 1545869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 7226065 - 7225886
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    |||||||||| ||||||| |||||||| || |||| ||||||||  ||||| ||| ||||| |||  ||||| | || | |||| || ||||||||||||    
T  7226065 tctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtccacaacaactcttt 7225966  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    || |||  |  || |  ||  || |||||| |||||| ||| |||||||| |||||||||| | |||||| |||||||||    
T  7225965 gatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcat 7225886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 1600453 - 1600515
Alignment:
Q  178 ttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||||||  |||||||||| |||||||||||||||| |||  |||||| |||||||||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcat 1600515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 1513475 - 1513410
Alignment:
Q  175 tgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||| ||||| |||||| |||| ||||||||||| || | ||||||||||| |||||||||    
T  1513475 tgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcat 1513410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 1517665 - 1517614
Alignment:
Q  74 cagttctctaccacatgattcactcccttctttgtgacatcataacaatttt 125  Q
    |||||||||||||||||  | |||||||||| ||||||||||| ||||||||    
T  1517665 cagttctctaccacatgcctaactcccttctctgtgacatcatgacaatttt 1517614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 1537945 - 1537770
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| ||||| || |||| |||||  ||||||||||||| |||||||  |||||||  ||  ||||| | || | ||||||| | ||||| ||||||||    
T  1537945 agttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaacactttgaga 1537846  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    |   | | | |||||  || | ||| ||||||||||| ||||||||||| || | ||||||||||| |||||||||    
T  1537845 ttacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcat 1537770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 1489413 - 1489364
Alignment:
Q  191 tttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||||| ||||||||||| || | ||||||||||| |||||||||    
T  1489413 tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcat 1489364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 6006255 - 6006304
Alignment:
Q  72 tgcagttctctaccacatgattcactcccttctttgtgacatcataacaa 121  Q
    ||||||| ||||| || ||  |||||||||||||||||||||||||||||    
T  6006255 tgcagttttctacgacttgcatcactcccttctttgtgacatcataacaa 6006304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 370842 - 370942
Alignment:
Q  66 gttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagat 165  Q
    |||| |||||||| |  |||||||| ||||||||| ||||||||| | | | ||||||||  ||||| | || | ||||||  |||||||||||||||||    
T  370842 gttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagat 370941  T
Q  166 c 166  Q
    |    
T  370942 c 370942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 1519193 - 1519145
Alignment:
Q  192 ttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    |||||| ||| |||||||||||||| | ||||||||||| |||||||||    
T  1519193 ttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcat 1519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 39101 - 39256
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    |||||||||||||||||| | ||||||||| |||||||||||| ||||||||  | |||| ||||  |||| ||  | | ||||||| | ||||||||||    
T  39101 tctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccactacaactcttt 39200  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctc 216  Q
    ||||||  ||||| ||||||||| | ||| |||||| |||  ||||||||||||||    
T  39201 gagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 52082586 - 52082677
Alignment:
Q  149 caacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||||||||||||  ||| ||||||||||| |||| |||||| | ||| |||||||||||||||||||||| ||||| |||||||||    
T  52082586 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcat 52082677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 7554413 - 7554554
Alignment:
Q  69 gcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatctt 168  Q
    |||||||||| ||||||||||| ||||||||||| | |||||||| || |||   ||| ||||||| ||   |||| || | |||||||||||||||| |    
T  7554413 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcat 7554512  T
Q  169 ataaaatgtttcatcgtcaacttttgtatatgataagttcaa 210  Q
    ||| | || |||||| |||||  |||||||||||||||||||    
T  7554513 atagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 52092776 - 52092873
Alignment:
Q  143 agcccgcaacaactctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||| ||| ||||||||||||||  ||| ||||| ||||| |||| |||||| | ||  |||||||||||||||||||||| ||||| |||||||||    
T  52092776 agcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcat 52092873  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 43634858 - 43634979
Alignment:
Q  92 ttcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaaatgtttcatcgtcaactt 191  Q
    ||||||||||||| ||||||||||   | ||| || |||||||| ||| |||| || | |||| |||||||| ||  ||||| |||| |||||||||| |    
T  43634858 ttcactcccttctctgtgacatca---ctattattcagtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacct 43634954  T
Q  192 ttgtatatgataagttcaacacctc 216  Q
    |||||||||| ||||||||| ||||    
T  43634955 ttgtatatgacaagttcaacgcctc 43634979  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 19468586 - 19468503
Alignment:
Q  156 tctttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 239  Q
    |||||||||||  ||||| ||||||||| ||||| ||||||| ||| || |||||||||||||  |||||||||  ||||||||    
T  19468586 tctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttca 19468503  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 1037842 - 1037670
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| |||||||| || || ||||| ||||| || |||| |||||| |||| ||||||||  || |||| ||   ||||||| |||||| |||||||||    
T  1037842 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 1037743  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagtt 237  Q
    || |||| | ||||||||| |||||   ||||| ||| ||||| |||||||| ||||  ||||||||||||||    
T  1037742 tcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtt 1037670  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 45245263 - 45245091
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| ||||| || ||||||||||| ||||||||||| | |||||||| |||||| ||||| | ||| | || | ||||||| | ||||||||||||||    
T  45245263 agttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 45245164  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagtt 237  Q
    ||  ||  | ||||||||| |||||  |||| | ||| || ||||||||||| | ||| ||||||| ||||||    
T  45245163 tcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 32785856 - 32785775
Alignment:
Q  159 ttgagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||||  ||||| || |||||| |||| | |||||| ||| |||||||||||||| | ||||||| |||||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcat 32785775  T

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Target: scaffold0295 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 802 - 630
Alignment:
Q  65 agttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgaga 164  Q
    ||||| |||||||| ||||| ||||| ||||| || |||| | |||| |||| ||||||||  ||||||| ||   | ||||| |||||| |||| ||||    
T  802 agttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgaga 703  T
Q  165 tcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagtt 237  Q
    || |||| | ||||||||| || ||  |||||| ||| ||||| |||||||| ||||  ||||||||||||||    
T  702 tcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtt 630  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 15092333 - 15092154
Alignment:
Q  61 tctcagttgcgtgcagttctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactcttt 160  Q
    ||||| ||| |||||||| |||| |||||| |||||||||   | |||||||| |||||||  || |||||| | || | ||||||| |||||| |||||    
T  15092333 tctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattcttt 15092234  T
Q  161 gagatcttataaaatgtttcatcgtcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 240  Q
    ||||||  ||| | ||||| ||| | ||| ||||| | ||| || |||||||||||||  | |||||||  |||||||||    
T  15092233 gagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcat 15092154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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