View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0909_low_5 (Length: 370)
Name: NF0909_low_5
Description: NF0909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0909_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 39 - 365
Target Start/End: Complemental strand, 45429154 - 45428829
Alignment:
| Q |
39 |
ctgtaagaataacatggtggatgataatatattattttgatctcacttaatttatttttggaaacgtttataactttcttaatttagnnnnnnnnnnngt |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
45429154 |
ctgtaagaataacatggtggatgataatatattattttgatcgcacttaatttatttttggaaacatttataactttcttaatttagaaaaaaaaaa-gt |
45429056 |
T |
|
| Q |
139 |
cattccctccaaaatgctgcattcaaacatgcccttttcgtgttgtgttttttgcctttacattttatcattttccagtctctaatgtataatgaaggtg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45429055 |
cattccctccaaaatgctgcattcaaacatgcccttttcgtgttttgttttttgcctttacattttatcattttccagtctctaatgtataatgaaggtg |
45428956 |
T |
|
| Q |
239 |
acatcacaagaactggggatcttgttgatccaatgagtggaagattctcccaactagtcagaaaaatgaccaacttaataatcagaccagctacaccaga |
338 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45428955 |
acatcacaagaactggggatcttgttgatccaacgcgtggaagattctcccaattagtcagaaaaatgaccaacttaataatcagaccagctacaccaga |
45428856 |
T |
|
| Q |
339 |
tatcatggctgaagaatctgtgctcct |
365 |
Q |
| |
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|||||||||||||||||| ||| |||| |
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| T |
45428855 |
tatcatggctgaagaatccgtggtcct |
45428829 |
T |
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