View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0910_low_1 (Length: 505)
Name: NF0910_low_1
Description: NF0910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0910_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 122 - 395
Target Start/End: Original strand, 38005128 - 38005401
Alignment:
| Q |
122 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38005128 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacatcaacatttttagaaagcctcaacaagctcctc |
38005227 |
T |
|
| Q |
222 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005228 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
38005327 |
T |
|
| Q |
322 |
ttggacccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005328 |
ttggacccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
38005401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38005010 - 38005056
Alignment:
| Q |
1 |
tgaaatagaatcatcgatccccacaaagactcaatccatcatgcctc |
47 |
Q |
| |
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|||| |||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
38005010 |
tgaattagaatcatcgatccccaaaaatactcaatccatcatgcctc |
38005056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 122 - 394
Target Start/End: Complemental strand, 26462679 - 26462407
Alignment:
| Q |
122 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
26462679 |
caccataaagtactaaagagtgataacatcagtcttgggtggttcagttggatcaaaatcatcaacaacaacatttttagaaagtctcaacaagctcctc |
26462580 |
T |
|
| Q |
222 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
26462579 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgctttctcaaacaacattgtatccttgttat |
26462480 |
T |
|
| Q |
322 |
ttggacccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctacc |
394 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26462479 |
ttggtcccaacaaacaatgtcccaatattctcaaaactggttgtaacaattcccatggcattggaaccctacc |
26462407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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