View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0910_low_10 (Length: 291)

Name: NF0910_low_10
Description: NF0910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0910_low_10
NF0910_low_10
[»] chr8 (2 HSPs)
chr8 (1-278)||(41351155-41351433)
chr8 (160-207)||(5960394-5960441)
[»] chr5 (2 HSPs)
chr5 (146-278)||(2590835-2590967)
chr5 (157-209)||(12551975-12552027)
[»] chr2 (1 HSPs)
chr2 (146-224)||(37881850-37881928)
[»] chr1 (4 HSPs)
chr1 (204-260)||(27431285-27431341)
chr1 (154-207)||(37962865-37962918)
chr1 (154-207)||(51044468-51044521)
chr1 (147-187)||(27431440-27431480)
[»] chr4 (1 HSPs)
chr4 (146-207)||(43560553-43560614)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 41351433 - 41351155
Alignment:
Q  1 gattaatagtagtagatacataatggaactgcaactgcaacaattatattatataaattaaactatgtgctt-aattaaccaacagttccaagtattgta 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  41351433 gattaatagtagtagatacataatagaactgcaactgcaacaattatattatataaattaaattatgtgctttaattaaccaacagttccaagtattgta 41351334  T
Q  100 ttcattatcatcatctgaattaatttgatcttgcctttgaaacaaccagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttga 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41351333 ttcatgatcatcatctgaattaatttgatcttgcctttgaaacaaccagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttga 41351234  T
Q  200 gacctgatattagaagaggaaggtttacacctgatgaggagaagttaattattagccttcacagtgttgttggcaacag 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41351233 gacctgatattagaagaggaaggtttacacctgatgaggagaagttaattattagccttcacagtgttgttggcaacag 41351155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 5960441 - 5960394
Alignment:
Q  160 tgtggtaagagttgtcgattaagatggataaattatttgagacctgat 207  Q
    ||||| ||||||||| |||||||||||||||||||| | |||||||||    
T  5960441 tgtggaaagagttgtagattaagatggataaattatctaagacctgat 5960394  T

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Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 2590835 - 2590967
Alignment:
Q  146 cagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgatattagaagaggaaggtttacacctgatgaggagaagtt 245  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  2590835 cagggcttcaaaggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgatattagaagaggaaggtttacacctgaggaggagaagtt 2590934  T
Q  246 aattattagccttcacagtgttgttggcaacag 278  Q
    |||||| ||||||||  | |||||||| |||||    
T  2590935 aattataagccttcatggggttgttggtaacag 2590967  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 12551975 - 12552027
Alignment:
Q  157 aggtgtggtaagagttgtcgattaagatggataaattatttgagacctgatat 209  Q
    |||||||| ||||||||| | ||||| |||| |||||||||||| ||||||||    
T  12551975 aggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgatat 12552027  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 37881928 - 37881850
Alignment:
Q  146 cagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgatattagaagaggaaggtt 224  Q
    |||| ||||||||||||||||||||||||||  |  |||||| ||| ||||||||||||||||| |  |||||||||||    
T  37881928 caggtcttcaaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggtt 37881850  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 27431341 - 27431285
Alignment:
Q  204 tgatattagaagaggaaggtttacacctgatgaggagaagttaattattagccttca 260  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||| | ||||||    
T  27431341 tgatattagaagatgaaggtttacacctgaggaagagaagttaattatcaaccttca 27431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 37962865 - 37962918
Alignment:
Q  154 caaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 207  Q
    ||||||||||| ||||||||  | ||||||||||||||||| ||||| ||||||    
T  37962865 caaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgat 37962918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 51044468 - 51044521
Alignment:
Q  154 caaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 207  Q
    ||||||||||| ||||| ||| |||| ||||||||||| |||||||| ||||||    
T  51044468 caaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgat 51044521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 27431480 - 27431440
Alignment:
Q  147 agggcttcaaaggtgtggtaagagttgtcgattaagatgga 187  Q
    ||||||||||||||||||||||||| | || ||||||||||    
T  27431480 agggcttcaaaggtgtggtaagagtagccggttaagatgga 27431440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 43560614 - 43560553
Alignment:
Q  146 cagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 207  Q
    |||| |||||||| ||||| ||||||||| |||| ||||||||||| |||||||| ||||||    
T  43560614 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 43560553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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