View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0910_low_2 (Length: 478)
Name: NF0910_low_2
Description: NF0910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0910_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 135 - 382
Target Start/End: Complemental strand, 52536423 - 52536161
Alignment:
| Q |
135 |
atattctagtagttgaacaagaatgaaatttatatataactgattcagaacagaagaaatataacaaaattactctgtaagataagatgagaaaaagaga |
234 |
Q |
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| T |
52536423 |
atattctagtagttgaacaagaatgaaatttatatataactgattcagaacagaagaaatataacaaaattactctgtaagataagatgagaaaaagaga |
52536324 |
T |
|
| Q |
235 |
aaaactaattaatggttggggtaactt-cctattctcgtgtcagctattccttattctcaattattattcgaccgg--gt------------aaagaaat |
319 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
52536323 |
aaaactaattaatggttggggtaacttccctattctcgtgtcagctattccttattctcaattattattcgaccggccgtagagaaaaggaaaaagaaat |
52536224 |
T |
|
| Q |
320 |
aatgttagtggctatggtatattgtggaaataaaagttcgatcataccttgtctaattctttc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52536223 |
aatgttagtggctatggtatattgtggaaataaaagttcgatcataccttgtctaattctttc |
52536161 |
T |
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