View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0910_low_3 (Length: 418)
Name: NF0910_low_3
Description: NF0910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0910_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 29 - 299
Target Start/End: Complemental strand, 44817232 - 44816962
Alignment:
| Q |
29 |
aataatcaccaacaaaaaatctcaggtatgatgtatcaactcaatgacaataatattcttttacaaagaatcagatcttattgggaatatagcaattgag |
128 |
Q |
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| T |
44817232 |
aataatcaccaacaaaaaatctcaggtatgatgtatcaacccaatgacaataatattcttttacaaagaatcagatcttattgggaatatagcaattgag |
44817133 |
T |
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| Q |
129 |
tacataaggaaaaggacatggattaaaaaataaaatctatcgttatgactcccttatttagtttcaaaactgatactttacactttaaaagagtcatgct |
228 |
Q |
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| T |
44817132 |
tacataaggaaaaggacatggattaaaaaataaaatctatcgttatgactcccttatttagtttcaaaactgatactttacactttaaaagagtcatgct |
44817033 |
T |
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| Q |
229 |
ttgcataattagtgattgaagtcagagatagagttcataattaatgaaaactggttgctctacagatttat |
299 |
Q |
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| T |
44817032 |
ttgcataattagtgattcaagtcagagatagagttcataattaatgaaaactggttgctctacacatttat |
44816962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 44816935 - 44816864
Alignment:
| Q |
326 |
tacaataactttattacccagccacgttttttagtttattccataagtcatcttcgtcttctgatttctctg |
397 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44816935 |
tacaataacattattacccagccacgttttttagtttattccataagtcatcttcgtcttctgatttctctg |
44816864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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