View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0910_low_5 (Length: 372)

Name: NF0910_low_5
Description: NF0910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0910_low_5
NF0910_low_5
[»] chr3 (1 HSPs)
chr3 (18-289)||(47059538-47059809)
[»] chr6 (3 HSPs)
chr6 (23-130)||(11726195-11726302)
chr6 (22-100)||(11726797-11726876)
chr6 (221-286)||(11726607-11726671)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 47059538 - 47059809
Alignment:
Q  18 aaggacaatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggcctatcgtttgcttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47059538 aaggacaatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggcctatcttttgcttg 47059637  T
Q  118 atttgaggcataatccagagattgccacatgtttcatcgaacggtgtgaacttgatgaaaatcagaatattcagttaattaaggatagagcgaggatgtt 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47059638 atttgaggcataattcagagattgccacatgtttcatcgaacggtgtgaacttgatgaaaatcagaatattcagttaattaaggatagagcgaggatgtt 47059737  T
Q  218 tgctgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaagaatc 289  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47059738 tgctgatttgttgtataaattgattgaaaaagggcattcaagtgttaggaatacaattatggaagaagaatc 47059809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 11726195 - 11726302
Alignment:
Q  23 caatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggcctatcgtttgcttgatttg 122  Q
    |||||||||||| ||||| ||||||||| ||  |||||| ||||| ||||||||||||| || ||| |||||||||||| | ||   |||||||||||||    
T  11726195 caatgctgaaatgtttaacgtggattaccatgttttgattgggtttccacatgggtgtgttcgatcagaattggagaggacgtactatttgcttgatttg 11726294  T
Q  123 aggcataa 130  Q
    ||||||||    
T  11726295 aggcataa 11726302  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 11726876 - 11726797
Alignment:
Q  22 acaatgctgaaatatttaatgtggatt-actatactttgatggggttgccacatgggtgtgatcaatctgaattggagag 100  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |||  ||||||| ||| |||||||||||    
T  11726876 acaatgctgaaatgtttaatgtggatttactatgctttgatggggtttccatatgaatgtgatcgatcagaattggagag 11726797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 11726671 - 11726607
Alignment:
Q  221 tgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaaga 286  Q
    |||||| ||||| |||||| ||||||||||| ||||| |||||| |||||| ||||||||||||||    
T  11726671 tgattttttgtagaaattgcttgagaaagggtattcatgtgttatgaatac-attatggaagaaga 11726607  T

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