View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_high_3 (Length: 328)
Name: NF0911_high_3
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 51669291 - 51668976
Alignment:
| Q |
6 |
ctccaacaaaatatctacaataatatgaaaaattaacttgaacagagaaaaatannnnnnncaagtaatcttcaaatggtgtcaactttggtctggggtt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51669291 |
ctccaacaaaatatctacaataatatgaaaaattaacttgaacagagaaaaatatttttttcaagtaatcttcaaatggtgtcaactttggtctggggtt |
51669192 |
T |
|
| Q |
106 |
tctttttccaattttgctttcatggcccatttgatctcgcaaaagt----------gcttatcttttgagctttggtcaatcttttctcacatgttaaca |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51669191 |
tctttttccaattttgctttcatggcccatttgatctcgcaaaagtatgcaaaagtgcttatcttttgagctttggtcaatcttttctcacatgttaaca |
51669092 |
T |
|
| Q |
196 |
aagttggtatgcctaaaactttttagatattgtaagacacgagatgaaatccatttgttcaaaaagataaaataccttcgaagtcaattttaccggatcc |
295 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51669091 |
aagtgggtatgcctaaaactttttagatattgcaagacacgagatgaaatccatttgttcaaaaagataaaataccttcgaagtcaattttaccggatcc |
51668992 |
T |
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| Q |
296 |
actactaactttagat |
311 |
Q |
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|||||||||||||||| |
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| T |
51668991 |
actactaactttagat |
51668976 |
T |
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