View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0911_low_1 (Length: 661)

Name: NF0911_low_1
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0911_low_1
NF0911_low_1
[»] chr4 (8 HSPs)
chr4 (9-138)||(41482849-41482978)
chr4 (297-440)||(32324699-32324842)
chr4 (58-123)||(41490532-41490597)
chr4 (46-122)||(41496845-41496922)
chr4 (297-374)||(9369667-9369742)
chr4 (297-372)||(10573384-10573457)
chr4 (297-380)||(6510359-6510442)
chr4 (297-391)||(38714064-38714156)
[»] chr8 (3 HSPs)
chr8 (297-449)||(12677470-12677622)
chr8 (297-449)||(33060978-33061127)
chr8 (291-375)||(25721384-25721468)
[»] chr7 (5 HSPs)
chr7 (297-445)||(33999805-33999953)
chr7 (297-423)||(13412989-13413115)
chr7 (299-407)||(15954471-15954579)
chr7 (297-445)||(39709148-39709300)
chr7 (297-329)||(7689945-7689977)
[»] chr1 (3 HSPs)
chr1 (297-439)||(750070-750212)
chr1 (297-371)||(43411516-43411590)
chr1 (297-374)||(16587803-16587878)
[»] chr2 (2 HSPs)
chr2 (320-449)||(33412656-33412785)
chr2 (297-439)||(16255764-16255906)
[»] chr3 (3 HSPs)
chr3 (300-444)||(52343835-52343979)
chr3 (292-449)||(32516526-32516685)
chr3 (297-329)||(39632176-39632208)
[»] chr5 (3 HSPs)
chr5 (297-439)||(36419142-36419284)
chr5 (342-449)||(26103045-26103152)
chr5 (292-361)||(28569654-28569723)
[»] chr6 (4 HSPs)
chr6 (299-391)||(13094725-13094817)
chr6 (297-381)||(2820682-2820764)
chr6 (297-381)||(12691749-12691831)
chr6 (297-329)||(2737666-2737698)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 41482978 - 41482849
Alignment:
Q  9 gaagaatattcaaatttaataatttagagaaaaatacatttgaagggtaataaaacttacagtgttttccaaaataaggattccattgtgggtttccaat 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41482978 gaagaatattgaaatttaataatttagagaaaaatacatttgaagggtaataaaacttacagtgttttccaaaataaggattccattgtgggtttccaat 41482879  T
Q  109 ttggtagtaattctggagcatcaatgcaat 138  Q
    |||||||||||||||||| |||||||||||    
T  41482878 ttggtagtaattctggagtatcaatgcaat 41482849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 297 - 440
Target Start/End: Complemental strand, 32324842 - 32324699
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  32324842 tttttttaacaaactaaaatgagatatatattatgaacaataacgatttaccgtgcacaagacatgcaaaaggtaaaccgaccaactaagatacaacagt 32324743  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaat 440  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  32324742 agggtgctattttagaatagcaccataaaaaagttacagaaaat 32324699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 41490597 - 41490532
Alignment:
Q  58 ataaaacttacagtgttttccaaaataaggattccattgtgggtttccaatttggtagtaattctg 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  41490597 ataaaacttacagtattttccaaaataaggattccattgtgggtctccaatttgggagtaattctg 41490532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 41496922 - 41496845
Alignment:
Q  46 atttgaagggtaataaaacttacagtgttttccaaaat-aaggattccattgtgggtttccaatttggtagtaattct 122  Q
    ||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||| |||||||||| |||||||||    
T  41496922 atttgaagggtaataaaccttacagtattttccaaaataaaagattccattgtgggtatccaatttggcagtaattct 41496845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 9369667 - 9369742
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaac 374  Q
    ||||||||||||||||||||||  |||||||||| || || |  ||||||||||||||||||||| |||||| |||||    
T  9369667 ttttttgaacaaactaaaatga--tatatattataaataaggttgatttaccgtgcacaagacatgcaaaagataaac 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 10573384 - 10573457
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaa 372  Q
    |||||| |||||||||||||||  ||||| |||| ||||| | |||||||||||||| ||||| | ||||||||||    
T  10573384 tttttttaacaaactaaaatga--tatattttataaacaaggtcgatttaccgtgcataagacttgcaaaaggtaa 10573457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 6510359 - 6510442
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgacca 380  Q
    ||||||||||||||||||||   |||||| |||| ||  | |   |||||||||||||||||||| ||||||||||||| ||||    
T  6510359 ttttttgaacaaactaaaatagtatatattttataaaagaggttaatttaccgtgcacaagacatgcaaaaggtaaaccaacca 6510442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 38714064 - 38714156
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagataca 391  Q
    |||||| ||||||||||||||||||||||  |||  |||| |   ||||||| |||||||||||| ||||| ||||||| ||| ||||| |||||    
T  38714064 ttttttaaacaaactaaaatgagatatat--tatagacaaagttaatttaccatgcacaagacatgcaaaaagtaaaccaacctaccaacataca 38714156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 297 - 449
Target Start/End: Original strand, 12677470 - 12677622
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||||  |||    
T  12677470 tttttttaacaaactaaaatgagatatatattatgaacaatggcgatttaccgtgcacaagacatgcaaaaggtaaaccgattaaccaagatacagtagt 12677569  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 449  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12677570 aaggtgctattttagaagagcaccataaaaaagttacagaaaattacacaata 12677622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 297 - 449
Target Start/End: Complemental strand, 33061127 - 33060978
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||    
T  33061127 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatgcaaaaggtaaaccgaccaaccaagatacaactgt 33061028  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 449  Q
    |||||||||||||| || ||||||   ||||| |||||||||| |||||||||    
T  33061027 agggtgctattttagaatagcacc---aaaaaattacagaaaactacacaata 33060978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 25721468 - 25721384
Alignment:
Q  291 atattcttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaacc 375  Q
    ||||| ||||| ||||||||||||||||||| |||||||| ||||| |   |||||||||||||||||||| ||||||| |||||    
T  25721468 atattttttttggaacaaactaaaatgagatttatattataaacaaggttaatttaccgtgcacaagacatgcaaaaggcaaacc 25721384  T

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Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 297 - 445
Target Start/End: Complemental strand, 33999953 - 33999805
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  33999953 ttttttgaacaaactaaaatgagatgtatattatgaacaaggacgatttaccgtgcacaagacatgcaaaaggtaaaccaaccaaccaagatacaacagt 33999854  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaattacac 445  Q
    |  ||||||||||||| || |||||||||||||||| ||||||||||||    
T  33999853 aaagtgctattttaaatgaacaccataaaaaagttatagaaaattacac 33999805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 297 - 423
Target Start/End: Complemental strand, 13413115 - 13412989
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||  |||    
T  13413115 ttttttgaacaaattaaaatgagatatatattatgaactatggcgatttaccgtgcacaagacatgcaaaaggtaaaccgaccaatcaagatacaggagt 13413016  T
Q  397 agggtgctattttaaaagagcaccata 423  Q
    |||||| ||||||| ||||||||||||    
T  13413015 agggtgatattttagaagagcaccata 13412989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 299 - 407
Target Start/End: Complemental strand, 15954579 - 15954471
Alignment:
Q  299 ttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagtag 398  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  15954579 ttttgaacaaactaaaatgagacatatattataaacaatggcgatttaccgtggacaagacatgcaaaaggtaaaccgaccaaccaaaatacaacagtag 15954480  T
Q  399 ggtgctatt 407  Q
    |||||||||    
T  15954479 ggtgctatt 15954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 39709148 - 39709300
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattat---gaacaatgacgatttaccgtgcacaagacatacaaaagg-taaaccgaccaaccaagatacat 392  Q
    |||||| |||||||||||||||||| ||||||||   |||||| || ||||||||||||| |||| || ||||||| |||||| |||||||| ||||||     
T  39709148 ttttttaaacaaactaaaatgagatgtatattattatgaacaaagaagatttaccgtgcaaaagatatgcaaaagggtaaaccaaccaaccaggatacaa 39709247  T
Q  393 cagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacac 445  Q
    ||||  |||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  39709248 cagtcaggtgctattttaaatgagcaccgtaaaaaagttatagaaaattacac 39709300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 7689945 - 7689977
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatatta 329  Q
    |||||| ||||||||||||||||||||||||||    
T  7689945 tttttttaacaaactaaaatgagatatatatta 7689977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 297 - 439
Target Start/End: Original strand, 750070 - 750212
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    |||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||| || |    
T  750070 tttttttaacaaactaaaatgatatatatattatgaacaatggcgatttaccatgcacaagacatgcaaaaggtaaaccaaccaaccaagatacaacaat 750169  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaa 439  Q
    | |||||||||||||||||||||||||||||||||| ||||||    
T  750170 aaggtgctattttaaaagagcaccataaaaaagttatagaaaa 750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 43411516 - 43411590
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggta 371  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  43411516 tttttttaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtacacaagatatgcaaaaggta 43411590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 16587878 - 16587803
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaac 374  Q
    ||||||||||||| |||||||||||||||  ||| |||||    |||||||| |||||||||||| ||||||| ||||    
T  16587878 ttttttgaacaaaataaaatgagatatat--tataaacaaaattgatttaccctgcacaagacatgcaaaaggaaaac 16587803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 33412785 - 33412656
Alignment:
Q  320 atatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcac 419  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  || |||||    
T  33412785 atatatattatgaacaatggcgatttaccgtgcacaagacatgcaaaaggtaaaccgaccaaccaagatacaacagtagggtgctatttttgaatagcac 33412686  T
Q  420 cataaaaaagttacagaaaattacacaata 449  Q
    ||||||||||||||| ||||||||||||||    
T  33412685 cataaaaaagttacataaaattacacaata 33412656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 297 - 439
Target Start/End: Complemental strand, 16255906 - 16255764
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |    
T  16255906 ttttttgaacaaactaaaatgagacatatattataaacaatggcgatttaccgtgcacaagacatgcaaaaggtaaaccgaccaaccaatatacaacaat 16255807  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaa 439  Q
    |||||||||||||| |  | |||||||||||||||||| ||||    
T  16255806 agggtgctattttagagtaacaccataaaaaagttacaaaaaa 16255764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 300 - 444
Target Start/End: Original strand, 52343835 - 52343979
Alignment:
Q  300 tttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagtagg 399  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||    
T  52343835 tttgaacaaactaaaatgagacatatattatgaacaatggtgatttaccgtgcacaagacatgcaaaaggtaaacctaccaaccaaaatacaacagtagg 52343934  T
Q  400 gtgctattttaaaagagcaccataaaaaagttacagaaaattaca 444  Q
    ||||||||||| || |||||||||||||||||||| |||| ||||    
T  52343935 gtgctattttagaatagcaccataaaaaagttacaaaaaactaca 52343979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 449
Target Start/End: Original strand, 32516526 - 32516685
Alignment:
Q  292 tattcttttttgaacaaactaaaatgagatatatat--tatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagata 389  Q
    |||| |||||| || |||||||||||||||||||||  ||| ||||| |   ||||  |||||| ||||||| ||||||||||||| |||  |||| |||    
T  32516526 tattatttttttaagaaactaaaatgagatatatatattataaacaaggttaatttgtcgtgcataagacatgcaaaaggtaaaccaacctgccaaaata 32516625  T
Q  390 catcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 449  Q
    ||  ||||||||| | || |||| ||||||||| || |||||| || | |||||||||||    
T  32516626 caagagtagggtgttgttctaaaggagcaccatcaagaagttagagcacattacacaata 32516685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 39632176 - 39632208
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatatta 329  Q
    |||||| ||||||||||||||||||||||||||    
T  39632176 tttttttaacaaactaaaatgagatatatatta 39632208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 297 - 439
Target Start/End: Original strand, 36419142 - 36419284
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagt 396  Q
    ||||||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||    
T  36419142 ttttttgaacaaagtaaaatgagacatatattataaacaatggcgatttaccgtgcacaagacatgcaaaaggtaaaccgaccaatcaaaatacaacagt 36419241  T
Q  397 agggtgctattttaaaagagcaccataaaaaagttacagaaaa 439  Q
    ||||||||| |||| |  | |||| ||||||||||||| ||||    
T  36419242 agggtgctaatttagagtaacaccgtaaaaaagttacaaaaaa 36419284  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 26103152 - 26103045
Alignment:
Q  342 atttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaatt 441  Q
    |||||||||||||||||||| |||| ||||| || ||| ||||| ||||| ||||| ||| || || |||| ||||||||| ||||||||| ||||||||    
T  26103152 atttaccgtgcacaagacatgcaaagggtaagccaacctaccaaaatacaacagtaaggttctgttctaaaggagcaccatcaaaaagttaaagaaaatt 26103053  T
Q  442 acacaata 449  Q
    ||||||||    
T  26103052 acacaata 26103045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 28569654 - 28569723
Alignment:
Q  292 tattcttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacat 361  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| |   ||||||||||||||||||||    
T  28569654 tatttttttttgaacaaactaaaatgagatatatattataaacaaggttaatttaccgtgcacaagacat 28569723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 13094725 - 13094817
Alignment:
Q  299 ttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaaccaagataca 391  Q
    |||| ||||||||||||||||||||||||||| ||||| |   ||||| | || ||||||||| ||||||||||||| ||| ||||| |||||    
T  13094725 tttttaacaaactaaaatgagatatatattataaacaaggttaatttatcatgaacaagacatgcaaaaggtaaaccaacctaccaaaataca 13094817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 2820682 - 2820764
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaa 381  Q
    |||||||||||||| |||||||  |||||||||| ||||| |   ||||||| |||||||||||| ||||||||||||| |||||    
T  2820682 ttttttgaacaaacaaaaatga--tatatattataaacaaggtgaatttaccttgcacaagacatgcaaaaggtaaaccaaccaa 2820764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 12691749 - 12691831
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatattatgaacaatgacgatttaccgtgcacaagacatacaaaaggtaaaccgaccaa 381  Q
    |||||| ||||||||||||||||||||||  ||| |||||    ||||||||  ||||||||||| ||||||||||||| |||||    
T  12691749 tttttttaacaaactaaaatgagatatat--tataaacaaaattgatttaccccgcacaagacatgcaaaaggtaaaccaaccaa 12691831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 2737698 - 2737666
Alignment:
Q  297 ttttttgaacaaactaaaatgagatatatatta 329  Q
    |||||||||||||| ||||||||||||||||||    
T  2737698 ttttttgaacaaacaaaaatgagatatatatta 2737666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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