View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_low_10 (Length: 266)
Name: NF0911_low_10
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_10 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 35629060 - 35628930
Alignment:
| Q |
107 |
gctctcaaactcagagccttttaggtcagagttctcgggctcagagtccttggaagaatcttaaacagaattagtagaacaaggtggattccttgcactt |
206 |
Q |
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| T |
35629060 |
gctctcaaactcagagccttttaggtcagagttctcgggctcagagtccttggaagaatcttaaacagaattagtagaacaaggtggattccttgcagtt |
35628961 |
T |
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| Q |
207 |
tatgataaggttgatacagttacatatgact |
237 |
Q |
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| T |
35628960 |
tatgataaggttgatagagttatatatgact |
35628930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35629205 - 35629093
Alignment:
| Q |
1 |
cctacaccatctgcttttgcacggtctggattaaccactcattggctgcagaggctgaagaagactattaaagactggtttaaaggaagttcatcgcatg |
100 |
Q |
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| T |
35629205 |
cctacaccatctgcttttgcacggtctggattaaccactcattggctgcagaggctgaagaagactattaaagaccggtttaaaggaagttcatcgaatg |
35629106 |
T |
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| Q |
101 |
catctggctctca |
113 |
Q |
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| T |
35629105 |
catctggctctca |
35629093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35635625 - 35635528
Alignment:
| Q |
1 |
cctacaccatctgcttttgcacggtctggattaaccactcattggctgcagaggctgaagaagactattaaagactggtttaaaggaagttcatcgca |
98 |
Q |
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| T |
35635625 |
cctacaacatcagcttttgcagagtctggattaaccatgcatgggctgcagaggctgcagaagactattaaaaaccggtttcaagcaagttcatcgca |
35635528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 35635486 - 35635446
Alignment:
| Q |
107 |
gctctcaaactcagagccttttaggtcagagttctcgggct |
147 |
Q |
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| T |
35635486 |
gctctcaaactcagagccttttgggtcagagttctcgggct |
35635446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 35634073 - 35634012
Alignment:
| Q |
107 |
gctctcaaactcagagccttttaggt---cagagttctcgggctcagagtccttggaagaat |
165 |
Q |
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| T |
35634073 |
gctctcaaactcagagccttttgggtggtcagagttctcgggctcagagcccttgaaagaat |
35634012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 2780 - 2744
Alignment:
| Q |
111 |
tcaaactcagagccttttaggtcagagttctcgggct |
147 |
Q |
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| T |
2780 |
tcaaactcagagccttttaggtcagagttctcgggct |
2744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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