View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_low_11 (Length: 261)
Name: NF0911_low_11
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 51668431 - 51668663
Alignment:
| Q |
29 |
atgaaaaacctcctcttcttctccagatggttcgtgactccgaagatattaaattcatgtaaggtttattgttcggctggtttgattttcgcaacttgct |
128 |
Q |
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| T |
51668431 |
atgaaaaacctcctcttcttctccagatggttcgtgactccgaagatattaaattcatgtaaggtttattgttcggctggtttgattttcgcaacttgct |
51668530 |
T |
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| Q |
129 |
tatggtttagaaactgaatcatgaacaaacaacatattaaatctctttctctacaggtctgctttacggtccttcaaacgccgcgttgcctatgcaaata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51668531 |
tatggtttagaaactgaatcatgaacaaacaacatattaaatctctttctctacaggtctgctttacggtccttcaaacgccgcgttgcttatgcaaata |
51668630 |
T |
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| Q |
229 |
ttcgttatgaccgtatccttttgttttagttca |
261 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51668631 |
ttcgttatgaccgtatccttttgttttagttca |
51668663 |
T |
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