View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0911_low_12 (Length: 251)
Name: NF0911_low_12
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 35629575 - 35629722
Alignment:
| Q |
96 |
tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35629575 |
tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa |
35629674 |
T |
|
| Q |
194 |
atataagaaactcgtcactatatgttaaaactctagtacgcatctctg |
241 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35629675 |
atataagaaacttgtcactatatgttaaaactctagtacgcatctctg |
35629722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 35635993 - 35636136
Alignment:
| Q |
96 |
tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
195 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35635993 |
tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
35636092 |
T |
|
| Q |
196 |
ataagaaactcgtcactatatgttaaaactctagtacgcatctc |
239 |
Q |
| |
|
|| ||||||| || | | ||||||| |||||| ||||||||| |
|
|
| T |
35636093 |
atcagaaacttatcgttctctgttaaatctctagaacgcatctc |
35636136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 35632731 - 35632876
Alignment:
| Q |
96 |
tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat |
195 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
35632731 |
tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat |
35632830 |
T |
|
| Q |
196 |
ataagaaactcgtcactatatgttaaaactctagtacgcatctctg |
241 |
Q |
| |
|
|||||||||| ||| | | |||||||||||||||| |||||||| |
|
|
| T |
35632831 |
ataagaaacttatcattctctgttaaaactctagtaaacatctctg |
35632876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 241
Target Start/End: Complemental strand, 10299257 - 10299123
Alignment:
| Q |
107 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc |
206 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10299257 |
gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt |
10299158 |
T |
|
| Q |
207 |
gtcactatatgttaaaactctagtacgcatctctg |
241 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
10299157 |
atcattatctgttaaaactctagtatgcatctctg |
10299123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 241
Target Start/End: Complemental strand, 10319689 - 10319555
Alignment:
| Q |
107 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc |
206 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10319689 |
gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg |
10319590 |
T |
|
| Q |
207 |
gtcactatatgttaaaactctagtacgcatctctg |
241 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
10319589 |
atcattatctgttaaaactctagtatgcatctctg |
10319555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 107 - 241
Target Start/End: Complemental strand, 10336805 - 10336671
Alignment:
| Q |
107 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc |
206 |
Q |
| |
|
||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10336805 |
gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg |
10336706 |
T |
|
| Q |
207 |
gtcactatatgttaaaactctagtacgcatctctg |
241 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
10336705 |
atcattatctgttaaaactctagtatgcatctctg |
10336671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
| Q |
107 |
gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact |
205 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| |||||| |
|
|
| T |
10338557 |
gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact |
10338459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 170 times since January 2019
Visitors: 6702