View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0911_low_13 (Length: 251)

Name: NF0911_low_13
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0911_low_13
NF0911_low_13
[»] chr3 (3 HSPs)
chr3 (2-161)||(20519405-20519567)
chr3 (30-165)||(54437811-54437946)
chr3 (30-162)||(39341204-39341336)
[»] chr8 (6 HSPs)
chr8 (66-162)||(6630320-6630416)
chr8 (82-162)||(6803880-6803960)
chr8 (79-162)||(32166739-32166822)
chr8 (82-152)||(35574589-35574658)
chr8 (13-98)||(34695817-34695902)
chr8 (109-162)||(35574747-35574800)
[»] chr5 (4 HSPs)
chr5 (24-162)||(2243255-2243392)
chr5 (30-140)||(17736714-17736824)
chr5 (66-162)||(7215406-7215502)
chr5 (83-139)||(40483739-40483795)
[»] chr2 (6 HSPs)
chr2 (13-151)||(16576236-16576374)
chr2 (30-160)||(9050065-9050195)
chr2 (13-162)||(38576876-38577024)
chr2 (60-149)||(17606579-17606668)
chr2 (79-139)||(38576738-38576798)
chr2 (2-152)||(16863435-16863583)
[»] chr7 (1 HSPs)
chr7 (120-162)||(7463777-7463819)
[»] chr1 (2 HSPs)
chr1 (81-160)||(7104321-7104400)
chr1 (73-152)||(38839609-38839688)
[»] chr6 (1 HSPs)
chr6 (74-152)||(32047039-32047117)
[»] chr4 (1 HSPs)
chr4 (30-162)||(25062495-25062627)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 20519567 - 20519405
Alignment:
Q  2 aaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataa-----aactttttcattttcttcattcaacgtgtg 96  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||     ||||||||||||||||||||||||||||||    
T  20519567 aaaaattccttttttcttcatctttcttcttacaatcagttaccattttaatataaaaaaaaaaacatcaaactttttcattttcttcattcaacgtgtg 20519468  T
Q  97 atatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattc 161  Q
    |||||| |||| ||||||||||||| |||||||| ||||  ||||||||||||||| ||||||||    
T  20519467 atatccatctttttcgttccaaaattgaatcatatttgt--ttacgagtaaattacccccaattc 20519405  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 54437811 - 54437946
Alignment:
Q  30 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 129  Q
    |||||||||||||||||||||||| | ||||  || |||||| ||||| ||| ||||| |||  ||| | ||| |||| ||| ||  |||||| ||||||    
T  54437811 cttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatcat 54437910  T
Q  130 acttgtcattacgagtaaattactcccaattcaaca 165  Q
    | || ||||||   ||||||||| || |||||||||    
T  54437911 atttatcattagaggtaaattacccctaattcaaca 54437946  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 39341204 - 39341336
Alignment:
Q  30 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 129  Q
    ||||| || |||||||||||| || | || | ||| |||||||||||| | ||||||||||| || ||| ||| | | |||||||| ||||| ||||| |    
T  39341204 cttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatctt 39341303  T
Q  130 acttgtcattacgagtaaattactcccaattca 162  Q
    | || ||||||   ||||||||| || ||||||    
T  39341304 atttatcattagaggtaaattacccctaattca 39341336  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 6630416 - 6630320
Alignment:
Q  66 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    |||||||||||| || |||||||||| |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | ||||||||||| |||||||    
T  6630416 aaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattca 6630320  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 6803960 - 6803880
Alignment:
Q  82 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    |||||||| | |||| ||||| ||| |||| || ||||||| |||| |||||||||||| | |||||||||||||||||||    
T  6803960 ttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattactcccaattca 6803880  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 32166822 - 32166739
Alignment:
Q  79 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    ||||||||| ||| |||||| | | |||  ||||||||||||||||||| ||||||||||||   ||||||||| |||||||||    
T  32166822 ttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattca 32166739  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 35574658 - 35574589
Alignment:
Q  82 ttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 152  Q
    |||||||||| ||| || ||| |||| |||||||||||||||||||||| | ||||| | |||||||||||    
T  35574658 ttcattcaacatgtcatctccatctttttcgttccaaaatcgaatcata-tcgtcataaggagtaaattac 35574589  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 34695817 - 34695902
Alignment:
Q  13 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgat 98  Q
    |||||||||||||| | |||||||||||||| ||||||  | | |||||||| ||| || ||||  | ||||||||||| ||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtgat 34695902  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 35574800 - 35574747
Alignment:
Q  109 ttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    |||||||||||||||||||||| |||||||||   ||||||||| | |||||||    
T  35574800 ttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattca 35574747  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 2243392 - 2243255
Alignment:
Q  24 tttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcg 123  Q
    ||||| |||||||| |||||||||||| || | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||||||||||| | |||||    
T  2243392 tttcttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcg 2243293  T
Q  124 aatcatacttgtcattacgagtaaattactcccaattca 162  Q
    |||  ||||||||||||   ||||||||| |||||||||    
T  2243292 aattttacttgtcattagaggtaaattac-cccaattca 2243255  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 17736824 - 17736714
Alignment:
Q  30 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 129  Q
    ||||||| || |||||||||| || | || | ||| |||||| ||||| ||||||| ||||| |||||| ||  |||||||||||| | ||||||||| |    
T  17736824 cttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatcgt 17736725  T
Q  130 acttgtcatta 140  Q
    |||||||||||    
T  17736724 acttgtcatta 17736714  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 7215502 - 7215406
Alignment:
Q  66 aaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    |||||||||||| ||||||||||||| |||||| | | |||  ||||||||| || || |||||| |||| ||||   |||||||| || |||||||    
T  7215502 aaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattctcaattca 7215406  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 40483739 - 40483795
Alignment:
Q  83 tcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 139  Q
    ||||||||| |||||| | | |||  ||||||||||||||||||||||||| |||||    
T  40483739 tcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcatt 40483795  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 16576236 - 16576374
Alignment:
Q  13 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 112  Q
    ||||||||| |||| | |||||||||| ||||||||||  | | || |  || |||||| ||||| | ||||||||||| |||||| ||| |||  ||||    
T  16576236 ttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 16576335  T
Q  113 ttccaaaatcgaatcatacttgtcattacgagtaaatta 151  Q
    ||||| ||||||||||||||| |||||| | ||||||||    
T  16576336 ttccagaatcgaatcatacttatcattaggggtaaatta 16576374  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 9050195 - 9050065
Alignment:
Q  30 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 129  Q
    ||||| ||||||||||||||| |||| || |  |  |||||| ||||| | | ||||||||| | |||| ||| |||  |||||| ||||||||||||||    
T  9050195 cttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcat 9050096  T
Q  130 acttgtcattacgagtaaattactcccaatt 160  Q
     |||||||||| | ||||||||||| |||||    
T  9050095 gcttgtcattaagggtaaattactctcaatt 9050065  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 38577024 - 38576876
Alignment:
Q  13 ttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcg 112  Q
    |||||||||| ||| |  ||| |||||||||||||||| || |||| |  || ||| || ||||| |  |||||||||| |||||| ||| |||  ||||    
T  38577024 ttttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcg 38576925  T
Q  113 ttccaaaatcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    | ||| |||| ||||||| ||||||||| ||||||||||| |||||||||    
T  38576924 taccataatcaaatcatatttgtcattaggagtaaattac-cccaattca 38576876  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 17606668 - 17606579
Alignment:
Q  60 attataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaat 149  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||| |||  ||||||| | |||| |||| |||||||||||  ||||||||    
T  17606668 attatcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcattgggagtaaat 17606579  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 38576798 - 38576738
Alignment:
Q  79 ttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcatt 139  Q
    ||||||||||||| |||| | ||| | | |||| |||||||||||||||||||||||||||    
T  38576798 ttcttcattcaacatgtgttctccatatccttcattccaaaatcgaatcatacttgtcatt 38576738  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 16863435 - 16863583
Alignment:
Q  2 aaaaattccttttttcttcatctttctccttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatc 101  Q
    |||||||||||||| |||| ||||| | ||||||||||||||||||||| || | || |  || ||| || ||||| ||||| ||||||  |||||| |     
T  16863435 aaaaattccttttt-cttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatcta 16863532  T
Q  102 cgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 152  Q
    | ||| |||||||  | ||||||||| |||||||||||  | |||||||||    
T  16863533 catctccttcgttatagaatcgaatcctacttgtcattgagcgtaaattac 16863583  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 7463777 - 7463819
Alignment:
Q  120 atcgaatcatacttgtcattacgagtaaattactcccaattca 162  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  7463777 atcgaatcatacttgtcgttacgagtaaattactccgaattca 7463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 7104321 - 7104400
Alignment:
Q  81 cttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattactcccaatt 160  Q
    ||||||||||| ||| |||| | |||  |||||| || ||||||||||||||||||||||  ||||| |||| |||||||    
T  7104321 cttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 38839688 - 38839609
Alignment:
Q  73 ttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 152  Q
    ||||| |||||||||| || |||||| |   |||||||||||||| ||||||||| ||||| |||||| |||| ||||||    
T  38839688 ttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattac 38839609  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 32047039 - 32047117
Alignment:
Q  74 tcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcatacttgtcattacgagtaaattac 152  Q
    |||| ||||||||||||| |||||| ||| | |||||||||||| ||| ||||| || |||||| ||  ||||||||||    
T  32047039 tcatcttcttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattac 32047117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 25062495 - 25062627
Alignment:
Q  30 cttacaatcagttaccattttaatataaaaattataaaactttttcattttcttcattcaacgtgtgatatccgtcttcttcgttccaaaatcgaatcat 129  Q
    |||||||||| ||||| |||| || | || | ||| |||||| ||||| |||||| |||||| ||| || |   ||||||||  |||| ||| |||||||    
T  25062495 cttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcat 25062594  T
Q  130 acttgtcattacgagtaaattactcccaattca 162  Q
    ||||||||| |   |||||||||| ||||||||    
T  25062595 acttgtcatgagttgtaaattacttccaattca 25062627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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