View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_low_14 (Length: 218)
Name: NF0911_low_14
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 41859796 - 41859933
Alignment:
| Q |
1 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
100 |
Q |
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| T |
41859796 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
41859895 |
T |
|
| Q |
101 |
tgtgaacttacatatgaggagctttgtttaactttcat |
138 |
Q |
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| T |
41859896 |
tgtgaacttacatatgaggagctttgtttaactttcat |
41859933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41887697 - 41887831
Alignment:
| Q |
1 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41887697 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
41887796 |
T |
|
| Q |
101 |
tgtgaacttacatatgaggagctttgtttaacttt |
135 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41887797 |
tgtgaacttacatatgaggagctttgtttaacttt |
41887831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41878667 - 41878800
Alignment:
| Q |
1 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagta-gaaacccttcaattattcatcatc |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||| | ||| | |||||||||||||||||||| ||| |
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| T |
41878667 |
gtagttgatcaaataaatgattatgtacttaagttgattcctggtacgtgtaattagttaaccatc--agtagaaagaaacccttcaattattcattatc |
41878764 |
T |
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| Q |
100 |
atgtgaacttacatatgaggagctttgtttaacttt |
135 |
Q |
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||||||||||| || ||||||||||||||||||||| |
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| T |
41878765 |
atgtgaacttaaatttgaggagctttgtttaacttt |
41878800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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