View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_low_2 (Length: 493)
Name: NF0911_low_2
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 39275201 - 39274981
Alignment:
| Q |
30 |
ataatctgcctgtatgaaatttttacaaattcatggatcaaagcgggaaagattgtatgcataagagagacatataacctattaaaactccaaagctaac |
129 |
Q |
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| T |
39275201 |
ataatctgcctgtatgaaatttttacaaattcatggatcaaagcgggaaagattgtatgcataagagagacatataacctattaaaactccaaagctaac |
39275102 |
T |
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| Q |
130 |
attgtatatagactggtaaaagacgaaatatgggggtacaagagtctcttatttgcatgactcttgcactaatcatgtaataaacttcttaattccaaga |
229 |
Q |
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| T |
39275101 |
attgtatatagactggtaaaagacgaaatatgggggtacaagagtctcttatttgcatgactcttgcactaatcatgtaataaacttcttaattccaaga |
39275002 |
T |
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| Q |
230 |
ctaaacactagacaaatgctt |
250 |
Q |
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||||||||||||||||||||| |
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| T |
39275001 |
ctaaacactagacaaatgctt |
39274981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 39274897 - 39274821
Alignment:
| Q |
334 |
gcactcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttcat |
410 |
Q |
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| T |
39274897 |
gcactcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttcat |
39274821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 20935349 - 20935276
Alignment:
| Q |
336 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
409 |
Q |
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| T |
20935349 |
actcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttca |
20935276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 20953887 - 20953816
Alignment:
| Q |
336 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttcctt |
407 |
Q |
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| T |
20953887 |
actcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctt |
20953816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 20954283 - 20954196
Alignment:
| Q |
47 |
aatttttacaaattcatggatcaaagcgggaaagattgtatgcataagagagacatataacctattaaaactccaaagctaacattgt |
134 |
Q |
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| T |
20954283 |
aattgttacaagtccatggatcaaagagggaaagatagtatgcataagagggacatagagcatattaaaactctaaaggtaacattgt |
20954196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 20936042 - 20935994
Alignment:
| Q |
47 |
aatttttacaaattcatggatcaaagcgggaaagattgtatgcataaga |
95 |
Q |
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| T |
20936042 |
aattgttacaaatccatggatcaaagcgggaaagatagtatgcataaga |
20935994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 1794037 - 1793965
Alignment:
| Q |
47 |
aatttttacaaattcatggatcaaagcgggaaagattgtatgcataagagagacatataacctattaaaactc |
119 |
Q |
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|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| | | ||||||||||| |
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| T |
1794037 |
aattgttacaaattcatggatcaaaggaggaaagatagtatgcataagagagacatagagcatattaaaactc |
1793965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 3217732 - 3217787
Alignment:
| Q |
345 |
tatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaa |
400 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
3217732 |
tatttccaatcttcgaagattaggtgagcttctaagcaagcaaagagcagccaaaa |
3217787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 3362635 - 3362562
Alignment:
| Q |
336 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
409 |
Q |
| |
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||||||||||||||| ||| || | ||||||||||||||| | |||||||||||||||||||||| || ||||| |
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| T |
3362635 |
actcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttca |
3362562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 3373623 - 3373550
Alignment:
| Q |
336 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
409 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
3373623 |
actcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttca |
3373550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 3379646 - 3379573
Alignment:
| Q |
336 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
409 |
Q |
| |
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|||||||| |||||| ||| ||| || ||||| |||||||| ||||||||||| |||||| ||| |||||||| |
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| T |
3379646 |
actcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttca |
3379573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 21238398 - 21238325
Alignment:
| Q |
336 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
409 |
Q |
| |
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||||||| ||||| |||| || | ||||||||||||||||| |||||||| ||||||||| | | |||||||| |
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| T |
21238398 |
actcacagatatttttaattttcgcagattaggtgagcttctgagcaagcagagagcagccgagatttccttca |
21238325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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