View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0911_low_3 (Length: 421)

Name: NF0911_low_3
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0911_low_3
NF0911_low_3
[»] chr4 (3 HSPs)
chr4 (10-393)||(25744219-25744608)
chr4 (10-144)||(25740519-25740653)
chr4 (10-91)||(17383423-17383504)
[»] chr2 (1 HSPs)
chr2 (10-91)||(8535008-8535089)
[»] scaffold0515 (1 HSPs)
scaffold0515 (251-291)||(10111-10151)
[»] scaffold0152 (2 HSPs)
scaffold0152 (251-291)||(27731-27771)
scaffold0152 (251-291)||(36507-36547)
[»] scaffold0055 (8 HSPs)
scaffold0055 (251-291)||(17958-17998)
scaffold0055 (251-291)||(20688-20728)
scaffold0055 (251-291)||(23927-23967)
scaffold0055 (251-291)||(37160-37200)
scaffold0055 (251-291)||(45009-45049)
scaffold0055 (251-291)||(57734-57774)
scaffold0055 (254-291)||(29273-29310)
scaffold0055 (251-291)||(76425-76464)
[»] scaffold0052 (8 HSPs)
scaffold0052 (251-291)||(8916-8956)
scaffold0052 (251-291)||(12118-12158)
scaffold0052 (251-291)||(16563-16603)
scaffold0052 (251-291)||(20931-20971)
scaffold0052 (251-291)||(39857-39897)
scaffold0052 (251-291)||(55338-55378)
scaffold0052 (254-291)||(66755-66792)
scaffold0052 (251-291)||(43328-43367)
[»] scaffold0986 (1 HSPs)
scaffold0986 (253-291)||(202-240)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 25744219 - 25744608
Alignment:
Q  10 attattctacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggctttttattccaaagcatttcccg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25744219 attattctacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggctttttattccaaagcatttccca 25744318  T
Q  110 ggtatgttacacttttacttgaacttaactgtatagtccttctcagagtaatttgcacttacattgcccttgcgccatataacacccgttggttatgtac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744319 ggtatgttacacttttacttgaacttaactgtatagtccttctcagaataatttgcacttacattgcccttgcgccatataacacccgttggttatgtac 25744418  T
Q  210 taaaaccaagtacaaggaaatatcatcagacgagtgacatagtattgtaagtggcagagtgaccttgctgccacgatccactagattcatccactgttga 309  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25744419 taaaaccaagtacaaggaaatattatcagacgagtgacatagtattgtaagtggtagagtgaccttgctgccacgatccactagattcatccactgttga 25744518  T
Q  310 ttcaattcattcttcat---nnnnnnnnntgt---agaggaaatattttatatacttaacaacccttcatgattgtttctgcagattggt 393  Q
    |||||||||||||||||            |||    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  25744519 ttcaattcattcttcataaaaaaaaaaaatgtgtgcgaggaaatattctatacacttaacaacccttcatgattgtttctgcagattggt 25744608  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 25740519 - 25740653
Alignment:
Q  10 attattctacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggctttttattccaaagcatttcccg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25740519 attattctacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggctttttattccaaagcatttccct 25740618  T
Q  110 ggtatgttacacttttacttgaacttaactgtata 144  Q
    |||||||||||||||||||| |||||||| |||||    
T  25740619 ggtatgttacacttttacttaaacttaacagtata 25740653  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 17383423 - 17383504
Alignment:
Q  10 attattctacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggcttttt 91  Q
    |||||| |||||||||  ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17383423 attattatacttatttttatgactatgcagaggagagattggaaaatgaattgctttagttgctgttgttttaaggcttttt 17383504  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 8535008 - 8535089
Alignment:
Q  10 attattctacttatttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggcttttt 91  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8535008 attattctacttattttcatgactatgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggcttttt 8535089  T

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Target: scaffold0515 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 10111 - 10151
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10111 gtattgtaagtggcagagtggccttgctgccacgatccact 10151  T

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Target: scaffold0152 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 27731 - 27771
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27731 gtattgtaagtggcagagtggccttgctgccacgatccact 27771  T

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Target: scaffold0152; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 36507 - 36547
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36507 gtattgtaagtggcagagtggccttgctgccacgatccact 36547  T

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Target: scaffold0055 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 17958 - 17998
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17958 gtattgtaagtggcagagtggccttgctgccacgatccact 17998  T

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Target: scaffold0055; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 20728 - 20688
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20728 gtattgtaagtggcagagtggccttgctgccacgatccact 20688  T

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Target: scaffold0055; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 23967 - 23927
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  23967 gtattgtaagtggcagagtggccttgctgccacgatccact 23927  T

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Target: scaffold0055; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 37200 - 37160
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  37200 gtattgtaagtggcagagtggccttgctgccacgatccact 37160  T

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Target: scaffold0055; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 45049 - 45009
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45049 gtattgtaagtggcagagtggccttgctgccacgatccact 45009  T

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Target: scaffold0055; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 57774 - 57734
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  57774 gtattgtaagtggcagagtggccttgctgccacgatccact 57734  T

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Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 29273 - 29310
Alignment:
Q  254 ttgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29273 ttgtaagtggcagagtggccttgctgccacgatccact 29310  T

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Target: scaffold0055; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 76464 - 76425
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  76464 gtattgtaagtg-cagagtggccttgctgccacgatccact 76425  T

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Target: scaffold0052 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 8956 - 8916
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  8956 gtattgtaagtggcagagtggccttgctgccacgatccact 8916  T

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Target: scaffold0052; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 12158 - 12118
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12158 gtattgtaagtggcagagtggccttgctgccacgatccact 12118  T

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Target: scaffold0052; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 16563 - 16603
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16563 gtattgtaagtggcagagtggccttgctgccacgatccact 16603  T

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Target: scaffold0052; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 20971 - 20931
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20971 gtattgtaagtggcagagtggccttgctgccacgatccact 20931  T

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Target: scaffold0052; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 39857 - 39897
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39857 gtattgtaagtggcagagtggccttgctgccacgatccact 39897  T

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Target: scaffold0052; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 55378 - 55338
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  55378 gtattgtaagtggcagagtggccttgctgccacgatccact 55338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 66792 - 66755
Alignment:
Q  254 ttgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  66792 ttgtaagtggcagagtggccttgctgccacgatccact 66755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 43367 - 43328
Alignment:
Q  251 gtattgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  43367 gtattgtaagtg-cagagtggccttgctgccacgatccact 43328  T

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Target: scaffold0986 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0986
Description:

Target: scaffold0986; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 202 - 240
Alignment:
Q  253 attgtaagtggcagagtgaccttgctgccacgatccact 291  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  202 attgtaagtggcagagtggccttgctgccacgatccact 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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