View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_low_5 (Length: 356)
Name: NF0911_low_5
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_5 |
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| [»] scaffold0591 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 28701372 - 28701127
Alignment:
| Q |
12 |
taatatggctaaaaaacaagacaagacaactggaaaaagaatcaactgcctaaaacgaaccttaatatagctnnnnnnnncaaaacaagacaactagact |
111 |
Q |
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| T |
28701372 |
taatatggctaaaaaacaagacaagacaactggaaaaagaatcaactacctaaaacgaaccttaatatagctaaaaaaa-caaaacaagacaactagact |
28701274 |
T |
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| Q |
112 |
tatatagctacacacattagtttgcgggtgttaggattttcaagttcatatggcaaaccattctaatgtgatagacttaggtgtgaatggaaatggagag |
211 |
Q |
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|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28701273 |
tata--gctacatacattagtttgcaggtgttaggattttcaagttcatatggcaaaccattctaatgtgatagacttaggtgtgaatggaaatggagag |
28701176 |
T |
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| Q |
212 |
aggaggtcagnnnnnnnngaattagaagatgaagaaagtttctcatttg |
260 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28701175 |
aggaggtcagaaaaaaaagaattagaagatgaagaaagtttctcatttg |
28701127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 28626239 - 28626116
Alignment:
| Q |
137 |
gggtgttaggattttcaagttcatatggcaaaccattctaatgtgatagacttagg---tgtgaatggaaatggagagaggaggtcagnnnnnnnngaat |
233 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
28626239 |
gggtgtttggattttcaagttcacatggcaaaccattctaatgtgttagacttaggtcatgtgaatggaaatggagagaggagatcagaaaaacaagaat |
28626140 |
T |
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| Q |
234 |
tagaagatgaagaaagtttctcat |
257 |
Q |
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| T |
28626139 |
tagaagatgaagaaagtttctcat |
28626116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 28712150 - 28712029
Alignment:
| Q |
142 |
ttaggattttcaagttcatatggcaaaccattctaatgtgatagacttagg---tgtgaatggaaatggagagaggaggtcagnnnnnnnngaattagaa |
238 |
Q |
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| T |
28712150 |
ttaggattttcaagttcacatggcaaaccattctaatgtgttagacttcggtcatgtgaatggtaatggagagaggagatcagaaaaacaagaattagaa |
28712051 |
T |
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| Q |
239 |
gatgaagaaagtttctcatttg |
260 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28712050 |
gatgaagaaagtttctcatttg |
28712029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 28719497 - 28719376
Alignment:
| Q |
142 |
ttaggattttcaagttcatatggcaaaccattctaatgtgatagacttagg---tgtgaatggaaatggagagaggaggtcagnnnnnnnngaattagaa |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||| |||| ||||||||| |
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| T |
28719497 |
ttaggattttcaagttcacatggcaaaccattctaatgtgttagacttcggtcatgtgaatggtaatggagagaggagatcagaaaaacaagaattagaa |
28719398 |
T |
|
| Q |
239 |
gatgaagaaagtttctcatttg |
260 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28719397 |
gatgaagaaagtttctcatttg |
28719376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 28727139 - 28727018
Alignment:
| Q |
142 |
ttaggattttcaagttcatatggcaaaccattctaatgtgatagacttagg---tgtgaatggaaatggagagaggaggtcagnnnnnnnngaattagaa |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||| |||| ||||||||| |
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| T |
28727139 |
ttaggattttcaagttcacatggcaaaccattctaatgtgttagacttcggtcatgtgaatggtaatggagagaggagatcagaaaaacaagaattagaa |
28727040 |
T |
|
| Q |
239 |
gatgaagaaagtttctcatttg |
260 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28727039 |
gatgaagaaagtttctcatttg |
28727018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 28626385 - 28626347
Alignment:
| Q |
13 |
aatatggctaaaaaacaagacaagacaactggaaaaaga |
51 |
Q |
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||||| |||||||||||||||| |||||||||||||||| |
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| T |
28626385 |
aatatagctaaaaaacaagacatgacaactggaaaaaga |
28626347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 28712296 - 28712255
Alignment:
| Q |
22 |
aaaaaacaagacaagacaactggaaaaagaatcaactgccta |
63 |
Q |
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|||||||||||||||||||||||||||| | |||||| |||| |
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| T |
28712296 |
aaaaaacaagacaagacaactggaaaaatattcaactaccta |
28712255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 28719643 - 28719602
Alignment:
| Q |
22 |
aaaaaacaagacaagacaactggaaaaagaatcaactgccta |
63 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||| |||| |
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| T |
28719643 |
aaaaaacaagacaagacaactggaaaaatattcaactaccta |
28719602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 28727285 - 28727244
Alignment:
| Q |
22 |
aaaaaacaagacaagacaactggaaaaagaatcaactgccta |
63 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||| |
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| T |
28727285 |
aaaaaacaagacaagacaactggaaaaatattcaactaccta |
28727244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 5022 - 5168
Alignment:
| Q |
114 |
tatagctacacacattagtttgcgggtgttaggattttcaagttcatatggcaaaccattctaatgtgatagacttagg---tgtgaatggaaatggaga |
210 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
5022 |
tatagctatatacattagtttgcgggtgttaggattttcaagtacacatggcaaaccattctaatgtgaaagacttaggtcatgtgaatggaaatggaga |
5121 |
T |
|
| Q |
211 |
gaggaggtcagnnnnnnnngaattagaagatgaagaaagtttctcat |
257 |
Q |
| |
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||||| || | |||||||||||||||||||||||||||| |
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| T |
5122 |
gaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcat |
5168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 4959 - 5003
Alignment:
| Q |
22 |
aaaaaacaagacaagacaactggaaaaagaatcaactgcctaaaa |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
4959 |
aaaaaataagacaagacaactggaaaaagagacaactacctaaaa |
5003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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