View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0911_low_9 (Length: 267)
Name: NF0911_low_9
Description: NF0911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0911_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 42944458 - 42944256
Alignment:
| Q |
36 |
acaaaaaagattgaatcctggttttctaatcttcacatttaggtgcattgcccaaaaaatttggttcaacattggcacatgtagcattgacaccaactcc |
135 |
Q |
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| T |
42944458 |
acaaaaaagatcgaatcctggttttctaagcttcacatttaggtgcattgcccaaaaaatttggttcaacgttggcacatgtagcattgacaccaactcc |
42944359 |
T |
|
| Q |
136 |
attgaatgtgaatctatgttactaagtaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaa |
235 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944358 |
attgaatgtgaatctatgttactaagcaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaa |
42944259 |
T |
|
| Q |
236 |
tat |
238 |
Q |
| |
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||| |
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| T |
42944258 |
tat |
42944256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 42893711 - 42893507
Alignment:
| Q |
41 |
aaagattgaatcctggttttctaatcttcacatttaggtgcat--tgcccaaaaaatttggttcaacattggcacatgtagcattgacaccaactccatt |
138 |
Q |
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|||||||||||||| ||| ||||| ||||| || |||||| | |||||||||| | |||| ||||||||||||||||||||||||| ||||||||| |
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| T |
42893711 |
aaagattgaatcctagttgtctaagcttcatatgtaggtgtgtgttgcccaaaaattagggtttaacattggcacatgtagcattgacagtaactccatt |
42893612 |
T |
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| Q |
139 |
gaatgtga-atctatgttactaagtaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaata |
237 |
Q |
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|||||||| ||||||||||||||| |||||||||||| | ||||| ||| |||||| |||||||||||||| |||||| |||||| || ||||| ||||| |
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| T |
42893611 |
gaatgtgagatctatgttactaagcaccacttcctcatatggtacaccattgctacgaataagaactacacaattttgagtggcaaaaatgcccataata |
42893512 |
T |
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| Q |
238 |
ttctt |
242 |
Q |
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||||| |
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| T |
42893511 |
ttctt |
42893507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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