View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_high_20 (Length: 283)
Name: NF0912_high_20
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 12229542 - 12229331
Alignment:
| Q |
26 |
atcggaaacaggtactctagctattccaacactattactactacttcctctagttttgtacttcacctctattgtaacaaaccttgcatgtaatggcacg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
12229542 |
atcggaaacaggtactctagctattccaacactattactactacttcctctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggcatg |
12229443 |
T |
|
| Q |
126 |
tcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcataatgaaccgtga |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12229442 |
tcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccgtga |
12229343 |
T |
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| Q |
226 |
caaatgtgtttc |
237 |
Q |
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|||||||||||| |
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| T |
12229342 |
caaatgtgtttc |
12229331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 12239077 - 12238866
Alignment:
| Q |
26 |
atcggaaacaggtactctagctattccaacactattactactacttcctctagttttgtacttcacctctattgtaacaaaccttgcatgtaatggcacg |
125 |
Q |
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||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12239077 |
atcggaaaccggtattctagccattccaacactattactactacttcctctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggcacg |
12238978 |
T |
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| Q |
126 |
tcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcataatgaaccgtga |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12238977 |
tcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccgtga |
12238878 |
T |
|
| Q |
226 |
caaatgtgtttc |
237 |
Q |
| |
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|||||||||||| |
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| T |
12238877 |
caaatgtgtttc |
12238866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 12235589 - 12235381
Alignment:
| Q |
26 |
atcggaaacaggtactctagctattccaacactattactactacttcctctagttttgtacttcacctctattgtaacaaaccttgcatgtaatggcacg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
12235589 |
atcggaaacaggtactctagctattccaacactattactact---tcctcttgttttgtacttcacctctattgttacgaaccttgcatgtaatggcacg |
12235493 |
T |
|
| Q |
126 |
tcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcataatgaaccgtga |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
12235492 |
tcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccatga |
12235393 |
T |
|
| Q |
226 |
caaatgtgtttc |
237 |
Q |
| |
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|||||||||||| |
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| T |
12235392 |
caaatgtgtttc |
12235381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 12245624 - 12245409
Alignment:
| Q |
20 |
aagaatatcggaaacaggtactctagctattccaacactattactactacttcctctagttttgtacttcacctctattgtaacaaaccttgcatgtaat |
119 |
Q |
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||||| |||||||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||| |
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| T |
12245624 |
aagaaaatcggaaacaggtattctagccattccaacactattgctactactacctcttgttttgtacttcacctctattgttaggaaccttgcatgtaat |
12245525 |
T |
|
| Q |
120 |
ggcacgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcataatgaa |
219 |
Q |
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||||| || || || | |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| | |||||||||||| | |||| |
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| T |
12245524 |
ggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgctcacttccctgttgcttccgtcacattgaa |
12245425 |
T |
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| Q |
220 |
ccgtgacaaatgtgtt |
235 |
Q |
| |
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|||| || |||||||| |
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| T |
12245424 |
ccgtaacgaatgtgtt |
12245409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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