View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0912_high_28 (Length: 228)

Name: NF0912_high_28
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0912_high_28
NF0912_high_28
[»] chr8 (2 HSPs)
chr8 (55-179)||(21560744-21560867)
chr8 (74-137)||(11426818-11426880)
[»] chr7 (1 HSPs)
chr7 (55-179)||(17034438-17034561)
[»] chr3 (2 HSPs)
chr3 (55-179)||(43264815-43264938)
chr3 (74-137)||(26216771-26216833)
[»] chr2 (3 HSPs)
chr2 (55-179)||(37900991-37901114)
chr2 (74-137)||(5967504-5967566)
chr2 (87-131)||(652612-652656)
[»] chr6 (5 HSPs)
chr6 (134-179)||(15372284-15372329)
chr6 (134-179)||(15351857-15351902)
chr6 (134-178)||(15321699-15321743)
chr6 (134-178)||(15375074-15375118)
chr6 (134-174)||(15354880-15354920)
[»] chr4 (1 HSPs)
chr4 (74-137)||(5432166-5432228)
[»] chr5 (1 HSPs)
chr5 (104-137)||(10185023-10185056)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 21560867 - 21560744
Alignment:
Q  55 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 154  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21560867 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaataaaaataaatttaaaccattaactacaatctctattttattttatgattttg 21560769  T
Q  155 actttaatttctaatacaaatgaat 179  Q
    |||||||||||||||||||||||||    
T  21560768 actttaatttctaatacaaatgaat 21560744  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 11426880 - 11426818
Alignment:
Q  74 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 137  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  11426880 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 11426818  T

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Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 17034438 - 17034561
Alignment:
Q  55 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 154  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17034438 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 17034536  T
Q  155 actttaatttctaatacaaatgaat 179  Q
    |||||||||||||||||||||||||    
T  17034537 actttaatttctaatacaaatgaat 17034561  T

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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 43264938 - 43264815
Alignment:
Q  55 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 154  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43264938 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 43264840  T
Q  155 actttaatttctaatacaaatgaat 179  Q
    |||||||||||||||||||||||||    
T  43264839 actttaatttctaatacaaatgaat 43264815  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 26216771 - 26216833
Alignment:
Q  74 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 137  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  26216771 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 26216833  T

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Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 37901114 - 37900991
Alignment:
Q  55 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 154  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37901114 tattgaggataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 37901016  T
Q  155 actttaatttctaatacaaatgaat 179  Q
    |||||||||||||||||||||||||    
T  37901015 actttaatttctaatacaaatgaat 37900991  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 5967566 - 5967504
Alignment:
Q  74 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 137  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||||||||||||    
T  5967566 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacaatctctat 5967504  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 652656 - 652612
Alignment:
Q  87 agaaaaacaattcaagaaaaataaatttaaaccattaactacaat 131  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||    
T  652656 agaaaaaggattcaacaaaaataaatttaaaccattatctacaat 652612  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 15372284 - 15372329
Alignment:
Q  134 ctattttattttatgattttgactttaatttctaatacaaatgaat 179  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  15372284 ctattttattttatgattttgactttcatttctaatacaaatgaat 15372329  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 15351857 - 15351902
Alignment:
Q  134 ctattttattttatgattttgactttaatttctaatacaaatgaat 179  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  15351857 ctattttatttcatgattttgactttcatttctaatacaaatgaat 15351902  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 15321699 - 15321743
Alignment:
Q  134 ctattttattttatgattttgactttaatttctaatacaaatgaa 178  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  15321699 ctattttagtttatgattttgactttcatttctaatacaaatgaa 15321743  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 15375118 - 15375074
Alignment:
Q  134 ctattttattttatgattttgactttaatttctaatacaaatgaa 178  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  15375118 ctattttattttatgattttgactttcattcctaatacaaatgaa 15375074  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 15354920 - 15354880
Alignment:
Q  134 ctattttattttatgattttgactttaatttctaatacaaa 174  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  15354920 ctattttagtttatgaatttgactttcatttctaatacaaa 15354880  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 5432166 - 5432228
Alignment:
Q  74 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 137  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  5432166 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 5432228  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 10185023 - 10185056
Alignment:
Q  104 aaaataaatttaaaccattaactacaatctctat 137  Q
    |||||||||| |||||||||||||||||||||||    
T  10185023 aaaataaattaaaaccattaactacaatctctat 10185056  T

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