View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_high_3 (Length: 585)
Name: NF0912_high_3
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 29 - 573
Target Start/End: Original strand, 20519616 - 20520160
Alignment:
| Q |
29 |
attttgtttgaggttgggacttgggagtgtacatgtaattgtttaatttgtctaggctaagttacttcacaattgagatagttcggataagtgttttctt |
128 |
Q |
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| T |
20519616 |
attttgtttgaggttgggacttgggagtgtacatgtaattgtttaatttgtctaggctaagttacttcacaattgagatagttcggataagtgttttctt |
20519715 |
T |
|
| Q |
129 |
taagtacttatataagagaaaacatgaaatcagcttaataaccatgccaccatgagtattttaacaactagcttatatacttataagtttaatgtaggtt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20519716 |
taagtacttatataagagaaaacatgaaatcagcttaataaccatgtcaccatgagtattttaactactagcttatatacttataagtttaatgtaggtt |
20519815 |
T |
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| Q |
229 |
ctctgataagttagaaacagaataacagagaatctataggtaggtaggtaatgttaaccaaggttttcaatcactatagcgattgcagtggtgttgcagt |
328 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20519816 |
ctctaataagttagaaacagaataacagagaatctataggtaggtaggtaatgttaaccaaggttttcaatcactatagcaattgcagtggtgttgcagt |
20519915 |
T |
|
| Q |
329 |
ccttgatgttgtagagaatcgtggttaagtatagcttatgcggtctcaattgcactgtgactgtggttttcatgtaccggccctgcttttaacagttagt |
428 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519916 |
cgttgatgttgtagagaatcgtggttaagtatagcttatgcggtctcaattgcactgtgactgtggttttcatgtaccggccctgcttttaacagttagt |
20520015 |
T |
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| Q |
429 |
actgttagtctcggtatttaggactgaaaaggtagatgaaaggaaatttagggaggctgaggagagaacccgtctctttctctcaaatacttgtaaatga |
528 |
Q |
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| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20520016 |
agtgttagtctcggtatttaggactgacaaggtagatgaaaggaaatttagggaggcggaggagagaacccgtctctttctctcaaatacttgtaaatga |
20520115 |
T |
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| Q |
529 |
gggagtgataaaattctcattatatcattctagatttcttgttct |
573 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20520116 |
gggagcgataaaattctcattatatcattctagatttcttgttct |
20520160 |
T |
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