View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_high_7 (Length: 445)
Name: NF0912_high_7
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 37603285 - 37602944
Alignment:
| Q |
11 |
cataggcctaaaagatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgtt |
110 |
Q |
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| T |
37603285 |
cataggcctaaaagatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgtt |
37603186 |
T |
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| Q |
111 |
atgctaaaatctaaaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaat |
210 |
Q |
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| T |
37603185 |
atgctaaaatctaaaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaat |
37603086 |
T |
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| Q |
211 |
caacatacccggcgagttcggtaacggacatcaaccttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctct |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37603085 |
caacatacccggcgagttcggtaacggacatcaatcttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatccttgaagctct |
37602986 |
T |
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| Q |
311 |
agagattaatgctctcagaaaccatgaagtgagtctttggtt |
352 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
37602985 |
agagattaatgctcttagaaaccaggaagtgagtctttggtt |
37602944 |
T |
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