View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_10 (Length: 444)
Name: NF0912_low_10
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 28 - 360
Target Start/End: Original strand, 2549593 - 2549925
Alignment:
| Q |
28 |
caaataatatgtgatcttagggtgaaagttgctttaatttgtgctacattttactttattcttctattgtcttcccctttcctagattcttatcatggga |
127 |
Q |
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| T |
2549593 |
caaataatatgtgatcttagggtgaaagttgctttaatttgtgctacattttactttattcttctattgtcttcccctttcctagattcttatcatggga |
2549692 |
T |
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| Q |
128 |
gacaagaaaagaaaagtatcattagcaaaagaagcgactttcatatatgtgattttgaagtatggccatccaaaaattatttctaaagaacttttatttt |
227 |
Q |
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| T |
2549693 |
gacaagaaaagaaaagtatcattagcaaaggaagcgactttcatatatgtgattttgaagtatggccatccaaaaattatttctaaagaacttttatttt |
2549792 |
T |
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| Q |
228 |
tacattgcaccaaacttgtctcaaa--gtcttttttcttcnnnnnnntgttaacaattgtcattagagcattctttaaagaataaaaataaagataactt |
325 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||| |
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| T |
2549793 |
tacattgcaccaaacttgtctcaaaatgtcttttttcttc-aaaaaatgttaacaattgtcattagagcattctttaaagaattaaaa-aaaaagaactt |
2549890 |
T |
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| Q |
326 |
taataataatgcgcaaaccttaaacaactaatatt |
360 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
2549891 |
taataataatgcacaaaccttaaacaactaatatt |
2549925 |
T |
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