View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_13 (Length: 419)
Name: NF0912_low_13
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 52153025 - 52153370
Alignment:
| Q |
29 |
agaatcggccaactacagaacccacgccagactctctacggcataaaaacaaggcattgataactccaaactacaccaggcagcagcttgaaagaacacc |
128 |
Q |
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| T |
52153025 |
agaatcggccaactacagaacccacgccagactctctacggcataaaaacaaggcattgataactccaaactacaccaggcagcagcttgaaagaacacc |
52153124 |
T |
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| Q |
129 |
cctgcagaaacacaccaacctgccaacccaacaccagccttccttaaacactcaaaaaccgcgacccaaatagttgaatgccaaattagtatnnnnnnnc |
228 |
Q |
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| T |
52153125 |
cctgcagaaacacaccaacctgccaacccaacaccagcctcccttaaacactcaaaaaccgcgacccaaatagttgaatgccaaattagtat-aaaaaac |
52153223 |
T |
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| Q |
229 |
ccttcaaagcttcttatttctaccttccccatgcaaccaaaccaaataaatttacaaatttgttggagtcaataaattaagcccaggccaacaaaacaca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
52153224 |
ccttcaaagcttcttatttctaccttccccatgcaaccaaaccaaataaatttacaaatttggtggagtcaataaattaagcccaggccaacgaaacaca |
52153323 |
T |
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| Q |
329 |
accaaactcttgaagcaacctcacaatgcaagatacatgacacacag |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52153324 |
accaaactcttgaagcaacctcacaatgcaagatacatgacacacag |
52153370 |
T |
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