View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_14 (Length: 417)
Name: NF0912_low_14
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 122 - 354
Target Start/End: Original strand, 41082077 - 41082308
Alignment:
| Q |
122 |
aattacactttcaaataacacaactcttcaatagtagatccagaagatgactacacatggttctattctgtatgttggaatttccttatggttgattaac |
221 |
Q |
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| T |
41082077 |
aattgcactttcaaataacacaactcttcaatagtagatccagaagatgactacacatggttctattctgtatgttggaatttccttatggttgattaac |
41082176 |
T |
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| Q |
222 |
atgtaatatatggtagcgagcaaataagagaacatattaattcatcctcactccaatagctatattgtggtatcaactcatttaattgataaatctattc |
321 |
Q |
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| T |
41082177 |
atgtaatataaggtagcgagcaaataagagaacatattaattcatcctcactccaatagctatattgtgctatcaactca-ttaattgataaatctattc |
41082275 |
T |
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| Q |
322 |
acttgctcacttgaaaataagctcaaactgata |
354 |
Q |
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| T |
41082276 |
acttgctcacttgaaaataagctcaaactgata |
41082308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 138 - 350
Target Start/End: Original strand, 41104780 - 41104991
Alignment:
| Q |
138 |
aacacaactcttcaatagtagatccagaagatgactacacatggttctattctgtatgttggaatttccttatggttgattaacatgtaatatatggtag |
237 |
Q |
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| T |
41104780 |
aacacaactctttaatagtagatccagatgatg-ctacacatggttctattctatatgttggaatttcatcaaggttgattaacatgtaatataaggtag |
41104878 |
T |
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| Q |
238 |
cgagcaaataagagaacatattaa---ttcatcctcactccaatagctatattgtggtatcaactcatttaattgataaatctattcacttgctcacttg |
334 |
Q |
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| T |
41104879 |
cgagcaaataagagaacatgttcattgttcatcctcactccaatatcaatattgtggtaccatatca---actcgataaatatattcacttgctcactta |
41104975 |
T |
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| Q |
335 |
aaaataagctcaaact |
350 |
Q |
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| T |
41104976 |
aaaataagctcaaact |
41104991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 39738981 - 39739082
Alignment:
| Q |
227 |
atatatggtagcgagcaaataagagaacatattaattcatcctcactccaatagctatattgtggtatcaactcatttaattgataaatctattcacttg |
326 |
Q |
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| T |
39738981 |
atataaggtagcaagcaaataagagaacacagt----catcctcactccaatagctattttgttgtatcaactca-ttaaatgataaatatattcactta |
39739075 |
T |
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| Q |
327 |
ctcactt |
333 |
Q |
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| T |
39739076 |
ctcactt |
39739082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 43037251 - 43037312
Alignment:
| Q |
356 |
gaatgataagaattccaagtcctttaagctctcaaaggaagattttcctgttctttcaagca |
417 |
Q |
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| T |
43037251 |
gaatgataagaattccaagtcctttgagctctcaaaggaagattttcctgttctttcaagca |
43037312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 43053437 - 43053498
Alignment:
| Q |
356 |
gaatgataagaattccaagtcctttaagctctcaaaggaagattttcctgttctttcaagca |
417 |
Q |
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| T |
43053437 |
gaatgataagaattccaagtcctttgagctctcaaaggaagattttcctgttctttcaagca |
43053498 |
T |
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