View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_15 (Length: 412)
Name: NF0912_low_15
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 25 - 410
Target Start/End: Complemental strand, 7296550 - 7296159
Alignment:
| Q |
25 |
catcaaaatccaactatagaagggtgttctgaaaggtagaaattaagggtttgaatcaccttgaatgcatcatccatggtgatggagagggttccgtcgg |
124 |
Q |
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| T |
7296550 |
catcgaaatccaactatagaagggtgttctgaaaggtagaaattaagggtttgaatcaccttgaatgcattatccatggtgatggagagggttccgtcgg |
7296451 |
T |
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| Q |
125 |
aggattacggagactcctctccttgtattttatgttctaattactttgttctttattttgaatgataaaatgatatatatagaag---nnnnnnnnnnnn |
221 |
Q |
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| T |
7296450 |
aggattacggagactcctctccttgtattttatgttctaattactttgttctttattttgaatgacaaaatgatatatatagaagatttttttttttttt |
7296351 |
T |
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| Q |
222 |
nnnaaagacatatagttaatacttgactcattaaccgaggagaagtattagggaaattcgacctaaatata---aacaacaacaacactcacctaaaata |
318 |
Q |
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| T |
7296350 |
tttaaagaaatatagttaatacttgactcatcaactgaggagaagtatcaaggatattcgacctaaatataaacaacaacaacaacaatcacctaaaata |
7296251 |
T |
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| Q |
319 |
acatataaaggaaggggttcgaaaagtactcgtaatacaaacatgaaccaccttcgtagaattttctattttgtgacatattgttggagatg |
410 |
Q |
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| T |
7296250 |
acatataaaggaaggggttcgaaaagcactcgtaatacaaacatgaaccaccttcgtagaattttctattttttgacattttgttgaagatg |
7296159 |
T |
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