View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0912_low_16 (Length: 401)

Name: NF0912_low_16
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0912_low_16
NF0912_low_16
[»] chr5 (2 HSPs)
chr5 (88-240)||(29771467-29771619)
chr5 (239-299)||(14622070-14622130)
[»] chr4 (2 HSPs)
chr4 (240-305)||(7414310-7414375)
chr4 (240-305)||(7460391-7460456)
[»] chr8 (1 HSPs)
chr8 (239-305)||(557624-557690)
[»] chr2 (1 HSPs)
chr2 (239-305)||(15579432-15579497)
[»] chr3 (2 HSPs)
chr3 (232-305)||(48149999-48150071)
chr3 (245-305)||(42439926-42439985)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 29771467 - 29771619
Alignment:
Q  88 atggtatggttttcagttacttcttagtaataaatgatgcccgacatccaaacttctaaagaaacaatctagtattannnnnnnccttttaaagcctggg 187  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||    
T  29771467 atggtatggttttcagttatttcttagtaataaatgatgcccgacatccaaacttctaaagaaacaatctagtattatttttttccttttaaagcttggg 29771566  T
Q  188 tacataaatttacaaataatcaatgtaagtaatcatatagacaaataatttaa 240  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  29771567 tacataaatttacaaatagtcaatgcaagtaatcatatagacaaataatttaa 29771619  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 14622130 - 14622070
Alignment:
Q  239 aagagtgttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatca 299  Q
    ||||||||||||| |||| |||||||| |||| ||||||||||||||||||  ||||||||    
T  14622130 aagagtgttgctatatagcccgacagattcaaagcacgaaattgtacgacatgttcaatca 14622070  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 7414310 - 7414375
Alignment:
Q  240 agagtgttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatcataggct 305  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||    
T  7414310 agagtgttgctaaatagtccgacagattcaacgcacgaaattgtacgacatgttcaatcataggct 7414375  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 7460391 - 7460456
Alignment:
Q  240 agagtgttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatcataggct 305  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||    
T  7460391 agagtgttgctaaatagtccgacagattcaacgcacgaaattgtacgacatgttcaatcataggct 7460456  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 557690 - 557624
Alignment:
Q  239 aagagtgttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatcataggct 305  Q
    |||||||||||||||||| | |||||| |||| ||||||||||| ||||||  ||||||||||||||    
T  557690 aagagtgttgctaaatagcctgacagattcaacgcacgaaattgcacgacatgttcaatcataggct 557624  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 15579432 - 15579497
Alignment:
Q  239 aagagtgttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatcataggct 305  Q
    ||||| |||||||||||| |||||| | |||| ||||||||||| ||||||  ||||||||||||||    
T  15579432 aagagcgttgctaaatagcccgacatattcaa-gcacgaaattgcacgacatgttcaatcataggct 15579497  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 48150071 - 48149999
Alignment:
Q  232 ataatttaagagtgttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatcataggct 305  Q
    |||||| ||||| |||||||||||| || ||||| |||| ||||||||||| ||||||  |||| |||||||||    
T  48150071 ataattaaagagcgttgctaaatagcccaacagattcaa-gcacgaaattgcacgacatgttcagtcataggct 48149999  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 42439926 - 42439985
Alignment:
Q  245 gttgctaaatagtccgacagagtcaatgcacgaaattgtacgacacattcaatcataggct 305  Q
    |||||||||||| |||||||| |||| ||||||||||| ||||||  |||| |||||||||    
T  42439926 gttgctaaatagcccgacagattcaa-gcacgaaattgcacgacatgttcagtcataggct 42439985  T

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