View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0912_low_20 (Length: 351)

Name: NF0912_low_20
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0912_low_20
NF0912_low_20
[»] chr7 (3 HSPs)
chr7 (13-338)||(38041321-38041648)
chr7 (90-158)||(2767504-2767572)
chr7 (107-158)||(24250542-24250593)
[»] chr6 (2 HSPs)
chr6 (227-335)||(31837663-31837773)
chr6 (118-158)||(28867154-28867194)
[»] chr5 (2 HSPs)
chr5 (81-156)||(43579012-43579087)
chr5 (81-155)||(43590976-43591050)
[»] scaffold0122 (1 HSPs)
scaffold0122 (116-158)||(18603-18645)
[»] chr8 (1 HSPs)
chr8 (117-163)||(24068214-24068260)
[»] chr3 (1 HSPs)
chr3 (69-158)||(48897730-48897819)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 38041648 - 38041321
Alignment:
Q  13 aatatttaacgatggtataatttttacacaacattctttaat--tatatccatcaactcattgattttcagccaataataaatctaagtggttgaaatct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38041648 aatatttaacgatggtataatttttacacaacattctttaatattatatccatcaactcattgattttcagccaataacaaatctaagtggttgaaatct 38041549  T
Q  111 ttttgtgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggatttttattt 210  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041548 tttcgcgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggatttttattt 38041449  T
Q  211 tctttctaaatatcgcattaatcctccacatacacatttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttctgtt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041448 tctttctaaatatcgcattaatcctccacatacacatttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttctgtt 38041349  T
Q  311 aaatattccaacagaatctagtccatct 338  Q
    |||||||||||||||||| |||||||||    
T  38041348 aaatattccaacagaatcaagtccatct 38041321  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 2767572 - 2767504
Alignment:
Q  90 aaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||| ||| ||||||||||| || ||||||| |||||||||||||||||| || |||| ||||||||||    
T  2767572 aaatttaattggttgaaatcattctgtgatccattcttgatataatctctctatataaatagcaatgct 2767504  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 24250542 - 24250593
Alignment:
Q  107 atctttttgtgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  24250542 atcttttcttgatcaattcttgataaaatctctttagatagatagcaatgct 24250593  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 31837773 - 31837663
Alignment:
Q  227 attaatcctccacatacacat--ttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttctgttaaatattccaacag 324  Q
    |||||||||||| ||||| ||  ||||||||||||||| ||||||||| |||||||||||||| | | |||||||| ||||| ||||||||||||| |||    
T  31837773 attaatcctccatatacatatatttacatgtatttcaagaatacactatgttataatttgtatatatgaaatttgggatttcagttaaatattccagcag 31837674  T
Q  325 aatctagtcca 335  Q
    ||  |||||||    
T  31837673 aacttagtcca 31837663  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 28867194 - 28867154
Alignment:
Q  118 atcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||||||||| ||||||||||||||| || |||||||    
T  28867194 atcaattcttgataaaatctctttagataaataacaatgct 28867154  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 43579012 - 43579087
Alignment:
Q  81 gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatg 156  Q
    |||||||| |||  ||| ||| || |||||||| ||||||||||||||||||||| ||  ||||||| ||||||||    
T  43579012 gccaataagaaaattaattggctggaatcttttcgtgatcaattcttgatataatatcgctagataaatagcaatg 43579087  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 43591050 - 43590976
Alignment:
Q  81 gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaat 155  Q
    |||||||| ||| |||| ||| || |||||||| ||||||||||||| ||||||||||   |||||| |||||||    
T  43591050 gccaataagaaaactaattggctggaatcttttcgtgatcaattcttaatataatctcgcaagataaatagcaat 43590976  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 18645 - 18603
Alignment:
Q  116 tgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  18645 tgatcaattcttaataaaatctctttagataaatagcaatgct 18603  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 24068214 - 24068260
Alignment:
Q  117 gatcaattcttgatataatctctttagataattagcaatgcttgttt 163  Q
    ||||||||||||||| ||||||| ||||||| |||||||||| ||||    
T  24068214 gatcaattcttgataaaatctctctagataaatagcaatgctcgttt 24068260  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 48897730 - 48897819
Alignment:
Q  69 cattgattttcagccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||||||  | ||||| |||| ||| | | |||||  ||||| |||| ||||||||||| ||||||| ||||||| ||||||||||    
T  48897730 cattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttgataaaatctctctagataaatagcaatgct 48897819  T

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