View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_22 (Length: 341)
Name: NF0912_low_22
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 34898412 - 34898140
Alignment:
| Q |
1 |
aactgtcgttcttagaaatttttgttgccggtctgaaacatggcagtgaattttgtgaagtaaatagttttgtttttctataaatttctaagaaaaatac |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34898412 |
aactgtcgttctaagaaatttttgttgccggtcttaaacatggcagtgaatggtgtgaagtaaatagttttgtttttctttaaatttctaagaaaaatac |
34898313 |
T |
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| Q |
101 |
aaatcaacagtccaaaatacaaccaaacctatctaagcata----caatcaaatggatatgtaaaccattcatacaataggcaaaagggatcatttacat |
196 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34898312 |
aaatcaaccgtccaaaatacaaccaaacctatctaagcatatatacaatcaaatggatatgtaaaccattcatacaataggcaaaagggatcatttacat |
34898213 |
T |
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| Q |
197 |
caaatatatttgttcttggtcaaatgcttaatccgcatgatattccttcgtttacaacgtaagatccagtgag |
269 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34898212 |
caaatatatttgttcttggtcaaatgctcaatccgcatgatattccttcgtttacaacgtaagattcagtgag |
34898140 |
T |
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