View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_25 (Length: 320)
Name: NF0912_low_25
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39677343 - 39677105
Alignment:
| Q |
1 |
tcagtcttttgtatcaagttattatcaagaagatttatagttcttctnnnnnnnnttcatccttttatctaacatcccacaacttcaacatggtatccag |
100 |
Q |
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| T |
39677343 |
tcagtcttttgtatcaagttattatgaagaagatttatagttct---aaaaaatattcatccttttaactaacatcccacaacttcaacatggtatccag |
39677247 |
T |
|
| Q |
101 |
accctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaattt-ggacaattttatagttgtatacttgtatttgggaacctc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
39677246 |
accctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgggacaattttatagttgtatacttgtgtttgggaacctc |
39677147 |
T |
|
| Q |
200 |
tgtcgatatacaaaagcccaaagtttctaatctaacattcat |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677146 |
tgtcgatatacaaaagcccaaagtttctaatctaacattcat |
39677105 |
T |
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