View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0912_low_27 (Length: 319)

Name: NF0912_low_27
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0912_low_27
NF0912_low_27
[»] chr6 (5 HSPs)
chr6 (90-289)||(34145784-34145983)
chr6 (90-289)||(34158400-34158599)
chr6 (90-289)||(34118625-34118824)
chr6 (90-283)||(34089398-34089591)
chr6 (90-237)||(34104603-34104751)
[»] scaffold0620 (1 HSPs)
scaffold0620 (90-282)||(2848-3040)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 34145784 - 34145983
Alignment:
Q  90 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacacatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  34145784 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacccatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaaa 34145883  T
Q  190 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtcttaacattg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34145884 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtcttaacattg 34145983  T

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Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 34158400 - 34158599
Alignment:
Q  90 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacacatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  34158400 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacccatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaaa 34158499  T
Q  190 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtcttaacattg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34158500 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtcttaacattg 34158599  T

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Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 34118625 - 34118824
Alignment:
Q  90 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacacatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaga 189  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  34118625 catcatcatcaaattaaatttgtcttttcaaatttctgttctttcattttacccatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaaa 34118724  T
Q  190 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtcttaacattg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  34118725 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctgaaaaatattatgggggtcttaacattg 34118824  T

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Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 90 - 283
Target Start/End: Original strand, 34089398 - 34089591
Alignment:
Q  90 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacacatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaga 189  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||| | ||||||||||||||||| |||||||||| |||||||||||||| |    
T  34089398 catcatcatcaaattaaatttgtcttttcacatttttgttttttccttttacccgtgcagccgagtctcttcgcaatcttcaagatctcacaagcgcaaa 34089497  T
Q  190 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtctta 283  Q
    ||||||||||| ||||||||| ||||||| | |||||| |||||||||||||| || ||||||||||||||| |||||||||| || |||||||    
T  34089498 tggctagaagtagaaataggctatgttccttttgtgctgctgctagggcaaattatttggcaagttttttctgaaaaatattacggcagtctta 34089591  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 34104603 - 34104751
Alignment:
Q  90 catcatcatcaaattaaatttgtcttttc-acatttctgttctttcattttacacatgcagccgagtctcttcccaatcttcaacatctcacaagcgcag 188  Q
    |||| |||||||||||||||||||||||  |||||| |||||||||||||| | | ||||||| ||||||||| |||||||||||||||||||||||||     
T  34104603 catcttcatcaaattaaatttgtcttttttacatttttgttctttcatttttcccgtgcagccaagtctcttcgcaatcttcaacatctcacaagcgcaa 34104702  T
Q  189 atggctagaagtcgaaataggcgatgttccatgtgtgcttctgctaggg 237  Q
    ||| || | | | |||||| || ||||||  |||||| | |||||||||    
T  34104703 atgccttggactagaaatatgctatgttctttgtgtgttgctgctaggg 34104751  T

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Target: scaffold0620 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 90 - 282
Target Start/End: Original strand, 2848 - 3040
Alignment:
Q  90 catcatcatcaaattaaatttgtcttttcacatttctgttctttcattttacacatgcagccgagtctcttcccaatcttcaacatctcacaagcgcaga 189  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||||||||   ||||||||||||||||  ||||||||||||||||||||||||| |    
T  2848 catcatcatcaaattaaatttgtcttttcacatttttgtattttcattttaccagtgcagccgagtctctttgcaatcttcaacatctcacaagcgcaaa 2947  T
Q  190 tggctagaagtcgaaataggcgatgttccatgtgtgcttctgctagggcaaatcatgtggcaagttttttctaaaaaatattatgggagtctt 282  Q
    || |||||||| ||||||||| ||||||| |||||||| |||||||||||||| || ||||||||||   || ||||||||||||| ||||||    
T  2948 tgcctagaagtagaaataggctatgttccttgtgtgctgctgctagggcaaattatttggcaagtttaaactgaaaaatattatggcagtctt 3040  T

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