View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_28 (Length: 319)
Name: NF0912_low_28
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 265
Target Start/End: Original strand, 5173943 - 5174111
Alignment:
| Q |
97 |
agaaattccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg |
196 |
Q |
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||||||||||| ||| || ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5173943 |
agaaattccaattcaattttgttggttcaaaaagatcgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcctccaaaatatg |
5174042 |
T |
|
| Q |
197 |
tcatttggaatgagacaatatgttgatgatgattatcatgacggtcctatttttgaatcctcagtgtac |
265 |
Q |
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| T |
5174043 |
tcatttggaatgagacaatatgttcataatgatgatgatgacggtcctatttttgaattctcaatgtac |
5174111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 4856069 - 4855941
Alignment:
| Q |
101 |
attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat |
200 |
Q |
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||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4856069 |
attccaattcaattgtgtcggttaaaaaagatcgacataatggacctatcacggaacatgctcaatgcttcaataccatcttgcttccgaaatatgtcat |
4855970 |
T |
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| Q |
201 |
ttggaatgagacaatatgttgatgatgat |
229 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
4855969 |
ttggaatgagacaatacgttgatgatgat |
4855941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 5214845 - 5214973
Alignment:
| Q |
101 |
attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat |
200 |
Q |
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||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5214845 |
attccaattcaattgtgtcggttaaaaaagatagacataatggacctatcacggaacatgctcaatgcttcaataccatcttgcttccgaaatatgtcat |
5214944 |
T |
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| Q |
201 |
ttggaatgagacaatatgttgatgatgat |
229 |
Q |
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|||||||||| ||||| |||||||||||| |
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| T |
5214945 |
ttggaatgaggcaatacgttgatgatgat |
5214973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 4841576 - 4841404
Alignment:
| Q |
97 |
agaaattccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg |
196 |
Q |
| |
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||||||||||| ||| ||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4841576 |
agaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg |
4841477 |
T |
|
| Q |
197 |
tcatttggaatgagacaatatgttgatgatgattatcatgacggtcctatttttgaatcctcagtgtacaaag |
269 |
Q |
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|||||||||||||||||| ||||| || ||||| || |||||||| |||||||||||| |||| ||||||||| |
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| T |
4841476 |
tcatttggaatgagacaacatgttcataatgatgatgatgacggttctatttttgaattctcaatgtacaaag |
4841404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 5183305 - 5183406
Alignment:
| Q |
123 |
taaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcatttggaatgagacaatatgttga |
222 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5183305 |
taaaaaagatcaacataatggacttatcacggaacatgctcaatgcttcaataccatcttgctttcaaaatatgtcatttggaatgagacaatatgttga |
5183404 |
T |
|
| Q |
223 |
tg |
224 |
Q |
| |
|
|| |
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|
| T |
5183405 |
tg |
5183406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 5196684 - 5196811
Alignment:
| Q |
97 |
agaaattccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg |
196 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
5196684 |
agaaattccaatgcagttgtgtcggttaaaaaagatcaacataatggacttatcacgaaacatgctcaatgcttccataccatcttgctttcgaaatatg |
5196783 |
T |
|
| Q |
197 |
tcatttggaatgagacaatatgttgatg |
224 |
Q |
| |
|
| |||||||||||||||||||||||||| |
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|
| T |
5196784 |
ttatttggaatgagacaatatgttgatg |
5196811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 7143187 - 7143309
Alignment:
| Q |
101 |
attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat |
200 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| |||| ||| || |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7143187 |
attccaattcaattgtgtcggttaaaaaagatcgacaaaatagacctatcagaaaacatgctcaatgcttcaataccaccttgcttccaaaatatgtcat |
7143286 |
T |
|
| Q |
201 |
ttggaatgagacaatatgttgat |
223 |
Q |
| |
|
||||||||| ||||||||||||| |
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|
| T |
7143287 |
ttggaatgatacaatatgttgat |
7143309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 5161041 - 5161144
Alignment:
| Q |
101 |
attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat |
200 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
5161041 |
attccaattcaattgtgtcgattaaaaaagatcaacatgatggacctatcgcggaacatgttcaatgcttcaataccatcttgcttccaaaatttgacat |
5161140 |
T |
|
| Q |
201 |
ttgg |
204 |
Q |
| |
|
|||| |
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|
| T |
5161141 |
ttgg |
5161144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 5203560 - 5203597
Alignment:
| Q |
135 |
acataatggatctatcacggaacatgctcaatgcttca |
172 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||| |
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| T |
5203560 |
acatgatggacctatcacggaacatgctcaatgcttca |
5203597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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