View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_3 (Length: 612)
Name: NF0912_low_3
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 40068177 - 40067618
Alignment:
| Q |
1 |
acaaggcttttacctttaggaccaaatggattacaagcaggatgatctctatcttccccttcaggtagaaaagctcgccaataccaatcacgatcttgca |
100 |
Q |
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| T |
40068177 |
acaaggcttttacctttaggaccaaatggattacaagcaggatgatctctatcttccccttcaggtagaaaagctcgccaataccaatcgcgatcttgca |
40068078 |
T |
|
| Q |
101 |
acctcacaaaatactttccatccagtttcttctccgattctgttcgcttctccccgccaaagagtggatggagaagaatgttacctagtacctcaacatc |
200 |
Q |
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| T |
40068077 |
acctcacaaaatactttccatccagtttcttctccgattctgttcgcttctccccgccaaagagtggatggagaagaatgttacctagtacctcaacatc |
40067978 |
T |
|
| Q |
201 |
ttcctcggcagctctcaccgcaacgtgatgagcaatgttgcctccggaactatcaccagccatgtaagcataaaccttagagtcctttccactttgaagc |
300 |
Q |
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| T |
40067977 |
ttcctcggcagctctcaccgcaacgtgatgagcaatgttgcctccggaactatcaccagccatgtaagcataaaccttagagtcctttccactttgaagc |
40067878 |
T |
|
| Q |
301 |
catgtccttgatttgacccaatttagagcattccaaccatcttcataagcacacggataccgatgctcgggtgatcttctgtagtttacagaaacaacaa |
400 |
Q |
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| T |
40067877 |
catgtccttgatttgacccaatttagagcattccaaccatcttcataagcacacggataccgatgctcgggtgatcttctgtagtttacagaaacaacaa |
40067778 |
T |
|
| Q |
401 |
cagccttacacatgctcacaaggcgacggcagaaagtgtcatagatagcactattagctgaggaatgagagaaacttccaccatggaagaagattatgac |
500 |
Q |
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| T |
40067777 |
cagccttacacatgctcacaaggcgacggcagaaagtgtcatagatagcactattagctgaggaatgagagaaacttccaccatggaagaagattatgac |
40067678 |
T |
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| Q |
501 |
agggacaatctctgttgtgctcaagggcttttctagctctataattccccaagtagtaac |
560 |
Q |
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| T |
40067677 |
agggacaatctctgttgtgctcaagggcttttctagctctataattccccaagtagtaac |
40067618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 36557945 - 36557858
Alignment:
| Q |
2 |
caaggcttttacctttaggaccaaatggattacaagcaggatgatctctatcttccccttcaggtagaaaagctcgccaataccaatc |
89 |
Q |
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| T |
36557945 |
caaggcttcgaccctttggaccaaaagggttacacgcgtgatgatctctgtcttccccttcgggaagaaaagccctccaataccaatc |
36557858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 37387036 - 37386522
Alignment:
| Q |
13 |
cctttaggaccaaatggattacaagcaggatgatctctatcttccccttcaggtagaaaagctcgccaataccaatcacgatcttgcaacctcacaaaat |
112 |
Q |
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| T |
37387036 |
ccttttggaccaaacgggttacaagcagggtggtctctatcttcaccttctggtaaaaaagccctccaataccaatcacgatcttgtaatctaacaaagt |
37386937 |
T |
|
| Q |
113 |
actttccatccagtttcttctccgattctgttcgcttctccccgccaaagagtggatggagaagaatgttacctagtacctcaa---------catcttc |
203 |
Q |
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| T |
37386936 |
actttccatctaatctcatttcagaatctgttcttttttcaccaccaaacaaaggatgaagaagaatgttccctaacacttcaattccttctgctttttc |
37386837 |
T |
|
| Q |
204 |
ctcggcagctctcaccgcaacgtgatgagcaatgttgcctccggaactatcaccagccatgtaagcataaaccttagagtcctttccactttgaagccat |
303 |
Q |
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| T |
37386836 |
ctcacaagctttcactgctacatgatgaacaatgtttccaccagaactatcacctgccatgtaaacataaactttcttttctttcccactttgaagccat |
37386737 |
T |
|
| Q |
304 |
gtccttgatttgacccaatttagagcattccaaccatcttcataagcacacggataccgatgctcgggtgatcttctgtagtttacagaaacaacaacag |
403 |
Q |
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| T |
37386736 |
tttcttgacttcacccatttgagtgcattccaaccatcttcataagcacatggaaaccgatactccggtgatcgtcggtaattgaccgaaacaacagcag |
37386637 |
T |
|
| Q |
404 |
ccttacacatgctcacaaggcgacggcagaaagtgtcatagatagcactattagctgaggaatgagagaaacttccaccatggaagaagattatgacagg |
503 |
Q |
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| T |
37386636 |
ctttacaaacacttactaaccttctacaaaatgtatcatatatagcactatttgctgaagaatgagagaagcttccaccatggaagaatactataacagg |
37386537 |
T |
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| Q |
504 |
gacaatctctgttgt |
518 |
Q |
| |
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| T |
37386536 |
aacaatttctgttgt |
37386522 |
T |
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