View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_41 (Length: 275)
Name: NF0912_low_41
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 31395674 - 31395834
Alignment:
| Q |
34 |
aagaatattgaatggttaaagcaatatatgctgaaatgagaatcataaaggttacaaaaagatggagtgtaaataaaattatataggcttaaaagtaaga |
133 |
Q |
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| T |
31395674 |
aagaaaattgaatggttaaagcaatatatgctgaaatgagaatcataaaagttacaaaaagatgaagtgtaaataaaattatataggcttaaaaataaga |
31395773 |
T |
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| Q |
134 |
tataattttcaatttaactatatatgttggcagatacattgatgattagtacaaattggtt |
194 |
Q |
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| T |
31395774 |
tataattttcaatttaactatatatgttggcagatacattgatgattagtacaaattggtt |
31395834 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 48767483 - 48767521
Alignment:
| Q |
185 |
caaattggttggagctactatgagaagaagtgccatggt |
223 |
Q |
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| T |
48767483 |
caaattggttggagctactatgagaagaagtgccttggt |
48767521 |
T |
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