View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0912_low_42 (Length: 273)
Name: NF0912_low_42
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_42 |
 | |
|
| [»] scaffold0543 (1 HSPs) |
| | |
|
| [»] scaffold0754 (1 HSPs) |
| | |
|
| [»] scaffold0563 (7 HSPs) |
| | |
|
| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: scaffold0543 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 481 - 678
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
481 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
580 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
581 |
gccatctgccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacatagttaatgaaatcaattgaatagtaaattcat |
678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0754 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 3405 - 3208
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3405 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
3306 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3305 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
3208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: scaffold0563
Description:
Target: scaffold0563; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 256 - 59
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
256 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
157 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
156 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
59 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 9938 - 9741
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9938 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
9839 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
9741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 5624 - 5821
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
5624 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaaggaat |
5723 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5724 |
accatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
5821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 8900 - 8703
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
8900 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaaggaat |
8801 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8800 |
accatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
8703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 3861 - 4058
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
3861 |
catcatcataccataattgagtttcataagataaaccataacaactctcattctttgacaatgttccagagctaagtgtgtgtaagacatggaaaggaat |
3960 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3961 |
accatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttattgaaatcaattgaatagtaaattcat |
4058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 7073 - 6876
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
7073 |
catcatcataccataattgagtttcataagataaaccataacaactctcattctttgacaatgttccagagctaagtgtgtgtaagacatggaaaggaat |
6974 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6973 |
accatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttattgaaatcaattgaatagtaaattcat |
6876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #7
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 2027 - 2231
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
2027 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaaggaat |
2126 |
T |
|
| Q |
143 |
gccatctgcc-------aaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa |
235 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2127 |
accatctcccaaaggaaaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaa |
2226 |
T |
|
| Q |
236 |
ttcat |
240 |
Q |
| |
|
||||| |
|
|
| T |
2227 |
ttcat |
2231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 298 - 101
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
298 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
199 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 2027 - 2224
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
2027 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaaggaat |
2126 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2127 |
accatctcccaaaggaaaaactggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
2224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 15830517 - 15830714
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15830517 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
15830616 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15830617 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
15830714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 15833972 - 15834169
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15833972 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
15834071 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15834072 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
15834169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 15832245 - 15832442
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15832245 |
catcatcataccttaatttagtttcataagataaaccataacaaatctcattctttgacaacgttccagagctaagtgtgtgtaagacatggaaagcaat |
15832344 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagtaaattcat |
240 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15832345 |
gccatctaccaaaggaaaaacaggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaagtgaatagtaaattcat |
15832442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 15829432 - 15829618
Alignment:
| Q |
43 |
catcatcataccttaattgagtttcataagataaaccataacaactctcattctttgacaacgttccagagctaagtttgtgtaagacatggaaagcaat |
142 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
15829432 |
catcatcataccataattgagtttcataagataaaacataaca---ctcattctttgacaaagttccagagctaagtttatgtaagacatggcaagcaat |
15829528 |
T |
|
| Q |
143 |
gccatctgccaaaggaaaaataggtacatcaaaaatagaagaaatctttatgatacataaatacattgttaatgaaatcaattgaatagt |
232 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15829529 |
gccatctgccaaaggaaagacaggtacatcaaaaatagaagaaatgtttttgatacataaatacattgttaatggaatcaattgaatagt |
15829618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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