View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_45 (Length: 269)
Name: NF0912_low_45
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 12381594 - 12381447
Alignment:
| Q |
20 |
cgatcccccttccaatgtttcgggaaagcatttttcggcattcctttatcattaagagcatatttgtagtccttcaaaaatgc---------acaataat |
110 |
Q |
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| T |
12381594 |
cgatcccccttccaatgttttgggaaagcatttttaggcattcctttatcattaagagcatatttgtagtccttcaaaaatgcaaatatcaaacaataat |
12381495 |
T |
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| Q |
111 |
cttattaatttgcaaattaccaataagattggttcattaattttctat |
158 |
Q |
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| T |
12381494 |
cttattaatttgcaaattaccaataagattggttcattaattttctat |
12381447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 12381453 - 12381411
Alignment:
| Q |
177 |
tttctatcaagaataagaagaacttttataccttgagccatccatt |
222 |
Q |
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| T |
12381453 |
tttctatcaagaataagaa---cttttataccttgagccatccatt |
12381411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 14354336 - 14354264
Alignment:
| Q |
21 |
gatcccccttccaatgtttcgggaaagcatttttcggcattcctttatcattaagagcatatttgtagtcctt |
93 |
Q |
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| T |
14354336 |
gatcccccttccaatgactcgggtaagcattttttggcatccctttctcattaagagcatatttgtaatcctt |
14354264 |
T |
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